Gather multiple genomes output into one table

refresh-bio / KMC

Fast and frugal disk based k-mer counter

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Gather multiple genomes output into one table #169

Closed uguyet closed 2 years ago

uguyet commented 3 years ago

Is there a way to gather the results of kmer occurrence in several genomes (~1000) into one table? I tried to use the python library pandas but it turned out to be too greedy in memory. Thanks in advance.

marekkokot commented 2 years ago

Hi, sorry for the late response, currently it is not possible with KMC.