Open sashulkaSh opened 1 month ago
@sashulkaSh Thank you for reporting the problem. Please, give a size of created kmc_pre/kmc_suf files, size of the input FASTQ files and amount of free HDD space.
4 1.kmc_pre 4 1.kmc_suf 258M 1.long.kmc_pre 464G 1.long.kmc_suf 258M 1.tmp.kmc_pre 36G 1.tmp.kmc_suf PE reads - 319G *2 64T free space RAM 1T
@sashulkaSh I'm not able to infer, what is the reason of the problem. Can you give asccession number? And, as I see, the reads are trimmed - what is a strategy of trimming?
Hello! I run:
reckoner -genome 4500000000 -prefix ${p} -threads 128 -kmcmemory 900 -longkmer -verbose -reuse ${r1} ${r2}
then RECKONER does nothing, I left the program for a few days, nothing changed
In the top (or htop), I see that the program does not use resources
what is my problem? pls, help!
(files, that were created: 1.kmc_pre 1.kmc_suf 1.log 1.long.kmc_pre 1.long.kmc_suf 1.lst 1.tmp.kmc_pre 1.tmp.kmc_suf )