davidgirata
commented
5 years ago Plug in came back after "fit" was clicked again. but it is good to note this issue
Open davidgirata opened 5 years ago
davidgirata
commented
5 years ago Plug in came back after "fit" was clicked again. but it is good to note this issue
[INFO] Gel Lanes Fit [INFO] Gel Lanes Fit 1.0.5 [INFO] Loading gel-lanes-fit\data\2019_6_19\saved-state.bak ... [INFO] Could not find previously saved state [INFO] Loading gel-lanes-fit\data\2019_6_19\saved-state.bak ... [INFO] Could not find previously saved state [INFO] Saving to gel-lanes-fit\data\2019_6_19\saved-state.bak ... [INFO] Saving to gel-lanes-fit\data\2019_6_19\saved-state.bak ... [INFO] Saving to gel-lanes-fit\data\2019_6_19\saved-state.bak ... [INFO] Lane 1, RMS: 0.0606; [INFO] Saving to gel-lanes-fit\data\2019_6_19\Fit of 2019_6_19 Melted, TOPO II, Labeled plasmids.xls ... [INFO] Lane 3, RMS: 0.1494; [INFO] Lane 4, RMS: 0.1882; [INFO] Lane 8, RMS: 0.1075; [INFO] Lane 11, RMS: 0.0846; [INFO] Lane 5, RMS: 0.1870; [INFO] Lane 6, RMS: 0.1328; [INFO] Lane 10, RMS: 0.1382; [INFO] Lane 12, RMS: 0.0861; [INFO] Lane 7, RMS: 0.2116; [INFO] Lane 9, RMS: 0.1551; [INFO] Lane 2, RMS: 0.0613; [INFO] Time elapsed: 0.1 s
[INFO] Saving to gel-lanes-fit\data\2019_6_19\Fit of 2019_6_19 Melted, TOPO II, Labeled plasmids.xls ... [INFO] Lane 1, RMS: 0.0804; [INFO] Saving to gel-lanes-fit\data\2019_6_19\Fit of 2019_6_19 Melted, TOPO II, Labeled plasmids.xls ... [INFO] Lane 1, RMS: 0.0804; [INFO] Saving to gel-lanes-fit\data\2019_6_19\Fit of 2019_6_19 Melted, TOPO II, Labeled plasmids.xls ... [INFO] Lane 1, RMS: 0.0606; [INFO] Saving to gel-lanes-fit\data\2019_6_19\Fit of 2019_6_19 Melted, TOPO II, Labeled plasmids.xls ... [INFO] Lane 11, RMS: 0.0846; [INFO] Lane 3, RMS: 0.1494; [INFO] Lane 8, RMS: 0.1075; [INFO] Lane 4, RMS: 0.1882; [INFO] Lane 7, RMS: 0.2116; [INFO] Lane 6, RMS: 0.1328; [INFO] Lane 9, RMS: 0.1551; [INFO] Lane 2, RMS: 0.0613; [INFO] Lane 10, RMS: 0.1382; [INFO] Lane 12, RMS: 0.0861; [INFO] Lane 5, RMS: 0.1870; [INFO] Time elapsed: 0.1 s
[INFO] Saving to gel-lanes-fit\data\2019_6_19\Fit of 2019_6_19 Melted, TOPO II, Labeled plasmids.xls ... [INFO] Lane 1, RMS: 0.0591; [INFO] Saving to gel-lanes-fit\data\2019_6_19\Fit of 2019_6_19 Melted, TOPO II, Labeled plasmids.xls ... [INFO] Lane 8, RMS: 0.1075; [INFO] Lane 9, RMS: 0.1551; [INFO] Lane 3, RMS: 0.1494; [INFO] Lane 6, RMS: 0.1328; [INFO] Lane 11, RMS: 0.0766; [INFO] Lane 4, RMS: 0.1882; [INFO] Lane 2, RMS: 0.0594; [INFO] Lane 7, RMS: 0.2116; [INFO] Lane 5, RMS: 0.1870; [INFO] Lane 10, RMS: 0.1382; [INFO] Lane 12, RMS: 0.0861; [INFO] Time elapsed: 0.1 s
[INFO] Size mismatch: 0, 3 [INFO] Saving to gel-lanes-fit\data\2019_6_19\Fit of 2019_6_19 Melted, TOPO II, Labeled plasmids.xls ... [INFO] Lane 1, RMS: 0.0804; [INFO] Saving to gel-lanes-fit\data\2019_6_19\Fit of 2019_6_19 Melted, TOPO II, Labeled plasmids.xls ... [INFO] Custom Peak added: 1, 3384.265662881204, 599.9349240780911 [INFO] Lane 1, RMS: 0.0733; [INFO] Saving to gel-lanes-fit\data\2019_6_19\Fit of 2019_6_19 Melted, TOPO II, Labeled plasmids.xls ... [INFO] Lane 3, RMS: 0.1494; [INFO] Lane 9, RMS: 0.1551; [INFO] Lane 4, RMS: 0.1882; [INFO] Lane 8, RMS: 0.1075; [INFO] Lane 11, RMS: 0.0766; [INFO] Lane 7, RMS: 0.2116; [INFO] Lane 10, RMS: 0.1382; [INFO] Lane 6, RMS: 0.1328; [INFO] Lane 5, RMS: 0.2111; [INFO] Lane 2, RMS: 0.0594; [INFO] Lane 12, RMS: 0.0861; [INFO] Time elapsed: 0.1 s
[INFO] Saving to gel-lanes-fit\data\2019_6_19\Fit of 2019_6_19 Melted, TOPO II, Labeled plasmids.xls ... [INFO] Lane 1, RMS: 0.0733; [INFO] Saving to gel-lanes-fit\data\2019_6_19\Fit of 2019_6_19 Melted, TOPO II, Labeled plasmids.xls ... [INFO] Lane 3, RMS: 0.1494; [INFO] Lane 8, RMS: 0.1075; [INFO] Lane 9, RMS: 0.1551; [INFO] Lane 10, RMS: 0.1382; [INFO] Lane 11, RMS: 0.0766; [INFO] Lane 12, RMS: 0.0861; [INFO] Lane 4, RMS: 0.1882; [INFO] Lane 7, RMS: 0.2116; [INFO] Lane 5, RMS: 0.2111; [INFO] Lane 6, RMS: 0.1328; [INFO] Lane 2, RMS: 0.0594; [INFO] Time elapsed: 0.1 s
[INFO] Saving to gel-lanes-fit\data\2019_6_19\Fit of 2019_6_19 Melted, TOPO II, Labeled plasmids.xls ... [INFO] Custom Peak added: 5, 3248.079335204798, 585.175704989154 [INFO] Lane 1, RMS: 0.0733; [INFO] Saving to gel-lanes-fit\data\2019_6_19\Fit of 2019_6_19 Melted, TOPO II, Labeled plasmids.xls ... [INFO] Lane 8, RMS: 0.1075; [INFO] Lane 10, RMS: 0.1382; [INFO] Lane 6, RMS: 0.1328; [INFO] Lane 4, RMS: 0.1882; [INFO] Lane 3, RMS: 0.1494; [INFO] Lane 12, RMS: 0.0861; [INFO] Lane 11, RMS: 0.0766; [INFO] Lane 2, RMS: 0.0594; [INFO] Lane 9, RMS: 0.1551; [INFO] Lane 5, RMS: 0.2170; [INFO] Lane 7, RMS: 0.2116; [INFO] Time elapsed: 0.1 s
[INFO] Saving to gel-lanes-fit\data\2019_6_19\Fit of 2019_6_19 Melted, TOPO II, Labeled plasmids.xls ... [INFO] Lane 1, RMS: 0.0733; [INFO] Saving to gel-lanes-fit\data\2019_6_19\Fit of 2019_6_19 Melted, TOPO II, Labeled plasmids.xls ... [INFO] Lane 8, RMS: 0.1075; [INFO] Lane 9, RMS: 0.1551; [INFO] Lane 3, RMS: 0.1494; [INFO] Lane 10, RMS: 0.1382; [INFO] Lane 4, RMS: 0.1882; [INFO] Lane 11, RMS: 0.0766; [INFO] Lane 7, RMS: 0.2116; [INFO] Lane 5, RMS: 0.2111; [INFO] Lane 6, RMS: 0.1328; [INFO] Lane 12, RMS: 0.0861; [INFO] Lane 2, RMS: 0.0594; [INFO] Time elapsed: 0.1 s
[INFO] Saving to gel-lanes-fit\data\2019_6_19\Fit of 2019_6_19 Melted, TOPO II, Labeled plasmids.xls ... [INFO] Lane 1, RMS: 0.0733; [INFO] Saving to gel-lanes-fit\data\2019_6_19\Fit of 2019_6_19 Melted, TOPO II, Labeled plasmids.xls ... [INFO] Lane 3, RMS: 0.1494; [INFO] Lane 8, RMS: 0.1075; [INFO] Lane 11, RMS: 0.0846; [INFO] Lane 9, RMS: 0.1551; [INFO] Lane 6, RMS: 0.1328; [INFO] Lane 4, RMS: 0.1882; [INFO] Lane 5, RMS: 0.2111; [INFO] Lane 7, RMS: 0.2116; [INFO] Lane 12, RMS: 0.0861; [INFO] Lane 10, RMS: 0.1382; [INFO] Lane 2, RMS: 0.0613; [INFO] Time elapsed: 0.1 s
[INFO] Saving to gel-lanes-fit\data\2019_6_19\Fit of 2019_6_19 Melted, TOPO II, Labeled plasmids.xls ... [INFO] Custom Peak not added: 7, 3271.859512568585, 704.8893709327549 [INFO] Custom Peak added: 7, 3281.2641316830413, 705.7093275488069 [INFO] Lane 1, RMS: 0.0733; [INFO] Saving to gel-lanes-fit\data\2019_6_19\Fit of 2019_6_19 Melted, TOPO II, Labeled plasmids.xls ... [INFO] [LANE 7] Peak guess: 279.1323529411766, 706.0, 25.479654008640573 [INFO] Replaced with: 3281.2641316830413, 705.7093275488069, 6.369913502160143 [INFO] Lane 8, RMS: 0.1075; [INFO] Lane 11, RMS: 0.0846; [INFO] Lane 10, RMS: 0.1382; [INFO] Lane 12, RMS: 0.0861; [INFO] Lane 3, RMS: 0.1494; [INFO] Lane 4, RMS: 0.1882; [INFO] Lane 9, RMS: 0.1551; [INFO] Lane 7, RMS: 0.2426; [INFO] Lane 5, RMS: 0.2111; [INFO] Lane 6, RMS: 0.1328; [INFO] Lane 2, RMS: 0.0613; [INFO] Time elapsed: 0.1 s
[INFO] Saving to gel-lanes-fit\data\2019_6_19\Fit of 2019_6_19 Melted, TOPO II, Labeled plasmids.xls ... [INFO] Custom Peak added: 5, 3249.8419994896008, 586.8156182212581 [INFO] Lane 1, RMS: 0.0733; [INFO] Saving to gel-lanes-fit\data\2019_6_19\Fit of 2019_6_19 Melted, TOPO II, Labeled plasmids.xls ... [INFO] [LANE 7] Peak guess: 279.1323529411766, 706.0, 25.479654008640573 [INFO] Replaced with: 3281.2641316830413, 705.7093275488069, 6.369913502160143 [INFO] Lane 3, RMS: 0.1494; [INFO] Lane 8, RMS: 0.1075; [INFO] Lane 10, RMS: 0.1382; [INFO] Lane 11, RMS: 0.0846; [INFO] [LANE 5] Peak guess: 296.5588235294117, 588.0, 19.53440140662444 [INFO] Replaced with: 3249.8419994896008, 586.8156182212581, 5.095930801728114 [INFO] Lane 6, RMS: 0.1328; [INFO] Lane 12, RMS: 0.0861; [INFO] Lane 4, RMS: 0.1882; [INFO] Lane 7, RMS: 0.2426; [INFO] Lane 9, RMS: 0.1551; [INFO] Lane 2, RMS: 0.0613; [INFO] Lane 5, RMS: 0.2465; [INFO] Time elapsed: 0.1 s
[INFO] Size mismatch: 3, 0 Exception in thread "AWT-EventQueue-0" java.lang.IndexOutOfBoundsException: Index: 0, Size: 0 at java.util.ArrayList.rangeCheck(ArrayList.java:657) at java.util.ArrayList.get(ArrayList.java:433) at gellanesfit.Fitter.updateResultsTable(Fitter.java:147) at gellanesfit.MainDialog.actionPerformed(MainDialog.java:1460) at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022) at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348) at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402) at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259) at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:252) at java.awt.Component.processMouseEvent(Component.java:6539) at javax.swing.JComponent.processMouseEvent(JComponent.java:3324) at java.awt.Component.processEvent(Component.java:6304) at java.awt.Container.processEvent(Container.java:2239) at java.awt.Component.dispatchEventImpl(Component.java:4889) at java.awt.Container.dispatchEventImpl(Container.java:2297) at java.awt.Component.dispatchEvent(Component.java:4711) at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4904) at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4535) at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4476) at java.awt.Container.dispatchEventImpl(Container.java:2283) at java.awt.Window.dispatchEventImpl(Window.java:2746) at java.awt.Component.dispatchEvent(Component.java:4711) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:760) at java.awt.EventQueue.access$500(EventQueue.java:97) at java.awt.EventQueue$3.run(EventQueue.java:709) at java.awt.EventQueue$3.run(EventQueue.java:703) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:84) at java.awt.EventQueue$4.run(EventQueue.java:733) at java.awt.EventQueue$4.run(EventQueue.java:731) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:74) at java.awt.EventQueue.dispatchEvent(EventQueue.java:730) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:205) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93) at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)