Broken file: /share/PI/mrivas/ukbb/download/chr20impv1.bgen

[yk-tanigawa]

plink1.9 failed to convert /share/PI/mrivas/ukbb/download/chr20impv1.bgen with the following error massage:

Error: File read failure.

• script file:
  • https://github.com/rivas-lab/nanopore/blob/20170206_chr20impv1.bgen/dev/scripts/20170206/bgen2pgen.12572552.sh
• stdout file:
  • https://github.com/rivas-lab/nanopore/blob/20170206_chr20impv1.bgen/dev/scripts/20170206/bgen2pgen.12572552.out
• stderr file:
  • https://github.com/rivas-lab/nanopore/blob/20170206_chr20impv1.bgen/dev/scripts/20170206/bgen2pgen.12572552.err

The same script works for chromosome11, so it is likely this file is broken.

[yk-tanigawa]

Resolved.