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rki-mf1
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covsonar
A database-driven system for handling genomic sequences of SARS-CoV-2 and screening genomic profiles.
GNU General Public License v3.0
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querying for a specific mutation returns also genomes that do not contain this mutation
#78
akifoss
closed
1 year ago
6
Test/note/testing script
#77
silenus092
closed
2 years ago
0
Test/note/testing script
#76
silenus092
closed
2 years ago
0
covSonar1: Branch "Fix/v.1"- Update Sept. V.1.1.7
#75
silenus092
closed
2 years ago
0
--platform not working
#74
AliceWi
closed
1 year ago
1
Fix Readme and Add feature
#73
silenus092
closed
2 years ago
0
Allow to select output columns
#72
silenus092
closed
2 years ago
2
Update master to 1.16 from Fix/v.1 branch
#71
silenus092
closed
2 years ago
0
Test/note/testing script
#70
silenus092
closed
2 years ago
0
Test/note/testing script: Update to 92% overall test coverage.
#69
silenus092
closed
2 years ago
0
Update Feature/note/cov2_mpire
#68
silenus092
closed
2 years ago
0
Update Test Script
#67
silenus092
closed
2 years ago
0
Revert "Dev/cov2 mpire sf"
#66
silenus092
closed
2 years ago
0
Feature/k2/readme
#65
silenus092
closed
2 years ago
0
Dev/cov2 mpire sf
#64
stephan-fuchs
closed
2 years ago
8
Add mamba to GitHub actions environments, so testing works
#63
matthuska
closed
2 years ago
0
Fix crasher when importing sequences inside pytest --cov
#62
matthuska
closed
2 years ago
0
Add missing newline to end of paranoid alignment output
#61
matthuska
closed
2 years ago
0
Add pre-commit hooks to update formatting and run linter
#60
matthuska
closed
2 years ago
2
Releases to PyPI
#59
matthuska
closed
2 years ago
0
Enable test.pypi.org upload action for dev/cov2_mpire branch
#58
matthuska
closed
2 years ago
0
Prepare packing and automated testing
#57
matthuska
closed
2 years ago
0
July Patch - Bug Fix
#56
silenus092
closed
2 years ago
0
Fix parent-child construction script
#55
silenus092
closed
2 years ago
0
Decrease memory usage when outputting mutation profiles from large databases
#54
matthuska
closed
1 year ago
1
Information on NNNNN stretches
#53
hoelzer
closed
1 year ago
1
Create ci-v1.yml
#52
silenus092
closed
2 years ago
0
Create ci-v1x.yml
#51
silenus092
closed
2 years ago
0
--no_frameshifts does not work with --tsv
#50
hoelzer
closed
2 years ago
0
First > dev/cov2_mpire to covsonar2_mpire
#48
silenus092
closed
2 years ago
0
Dev/cov2 mpire - [merged]
#49
silenus092
closed
2 years ago
1
Restore sequence from file does not work
#27
silenus092
closed
2 years ago
0
Exact match for ANY character in match condtion.
#26
silenus092
closed
2 years ago
1
Update to [covSonar 1.1.4] - [merged]
#47
silenus092
closed
2 years ago
3
HotFix - [merged]
#46
silenus092
closed
2 years ago
1
SQL not working properly - Searching Any Mutation
#25
silenus092
closed
2 years ago
3
We need to talk about deletions ...
#24
silenus092
closed
1 year ago
1
Update to [covSonar 1.1.3] - [merged]
#45
silenus092
closed
2 years ago
10
Incorrect syntax in where clause (Query NOT on date column is not working)
#23
silenus092
closed
2 years ago
0
build database fails due to non-unique entries in fasta
#22
silenus092
closed
2 years ago
2
include date of submission in output
#21
silenus092
closed
2 years ago
0
Update to [covSonar V.1.1.2] - [merged]
#44
silenus092
closed
2 years ago
10
CovSonar fails when reference gff includes features from reverse strand
#20
silenus092
closed
1 year ago
0
Dev delete function - [merged]
#43
silenus092
closed
2 years ago
6
Mutation search returns less sequences than previous search
#19
silenus092
closed
2 years ago
1
Dev/v.1 - [merged]
#42
silenus092
closed
2 years ago
1
Fix and Add features - [merged]
#41
silenus092
closed
2 years ago
4
Zero length Hot Fix - [merged]
#40
silenus092
closed
2 years ago
1
Get results for any AA substitution does not work
#18
silenus092
closed
2 years ago
1
Suggestion: Option to get results for parent and all child lineages
#17
silenus092
closed
2 years ago
2
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