Error on starting job

[Alex-Karmazin]

I got error on start anatation job with dbsnp and my custom anotator. Error apears just in first 10 seconds after vcf file uploaded. In wcravat.log nothing special in log I got: """ 2022/07/30 17:34:45 oakvar C:\ProgramData\Anaconda3\envs\openCravatPlugin\Scripts\oc run C:\open-cravat\jobs\default\220730-173438\antonkulaga_38_all_rsid_chrompos.vcf -a dbsnp prs -l hg38 --skip reporter --temp-files 2022/07/30 17:34:45 oakvar started: Sat Jul 30 17:34:45 2022 2022/07/30 17:34:45 oakvar conf file: None 2022/07/30 17:34:45 oakvar input files: C:\open-cravat\jobs\default\220730-173438\antonkulaga_38_all_rsid_chrompos.vcf 2022/07/30 17:34:45 oakvar input assembly: hg38 2022/07/30 17:34:45 oakvar version: oakvar 2.5.4 C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar 2022/07/30 17:34:45 oakvar version: dbsnp 154.0.2 C:\dev\python\openCravatPlugin\modules\annotators\dbsnp """ But in console I got this: """ Traceback (most recent call last): File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\runpy.py", line 197, in _run_module_as_main return _run_code(code, main_globals, None, File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\runpy.py", line 87, in _run_code exec(code, run_globals) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\Scripts\oc.exe__main.py", line 7, in File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar__main.py", line 169, in main handle_exception(e) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar__main__.py", line 151, in handle_exception raise e File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\main__.py", line 162, in main ret = args.func(args) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\decorators.py", line 5, in change_args_for_cli ret = func(args) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\cli\run.py", line 7, in cli_run ret = run(args) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\decorators.py", line 32, in run_cli_func handle_exception(e) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\main.py", line 151, in handle_exception raise e File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\decorators.py", line 24, in run_cli_func ret = func(args) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\cli\run.py", line 43, in run return run(module.main()) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\nest_asyncio.py", line 38, in run return loop.run_until_complete(task) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\nest_asyncio.py", line 81, in run_until_complete return f.result() File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\asyncio\futures.py", line 201, in result raise self._exception File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\asyncio\tasks.py", line 256, in step result = coro.send(None) File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\cli\run.py", line 519, in main raise self.exception File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\cli\run.py", line 451, in main self.log_versions() File "C:\ProgramData\Anaconda3\envs\openCravatPlugin\lib\site-packages\oakvar\cli\run.py", line 262, in log_versions f"version: {module.name} {module.conf['version']} {os.path.dirname(module.script_path)}" KeyError: 'version' """ I running it on windows 10 on anaconda. Befor thet I use opencravat and it works fine on this anotators and vcf file.

[rkimoakbioinformatics]

Thanks. I'll take a look into it.

[rkimoakbioinformatics]

I have just published oakvar v2.5.5 which has a fix for it. Please try that one.

[Alex-Karmazin]

Thank you it works fine.