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rmarkello
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abagen
A toolbox for working with Allen Human Brain Atlas microarray expression data
https://abagen.readthedocs.io
BSD 3-Clause "New" or "Revised" License
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Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows
#234
dependabot[bot]
opened
1 week ago
0
Assistance Required: Issue with set_axis inplace Parameter in Pandas
#233
xiaobeiLiu
opened
2 months ago
0
AttributeError: 'DataFrame' object has no attribute 'append'
#232
psyzxy
opened
3 months ago
0
[...] not in index
#231
remenderfdif
opened
5 months ago
0
brain regions from atlas "missing" in expression df
#230
elosse
opened
5 months ago
0
get_expression file does not include all/desired genes
#229
elosse
closed
5 months ago
0
The problem of abagen obtaining the number of AHBA genes
#228
zzcpage
closed
7 months ago
1
Bug Report: ‘check_surface’ Function Offset Calculation Issue in ‘images.py’
#227
HollandSun
opened
9 months ago
0
return gene groups in abagen.get_expression_data
#226
JohannesWiesner
opened
10 months ago
0
DataFrame.set_axis() got an unexpected keyword argument 'inplace' with pandas 2.1.2
#225
JohannesWiesner
closed
9 months ago
12
Question about atlas
#224
joeyb87
opened
10 months ago
0
Question about using freesurfer .annot files
#223
xuansean
closed
7 months ago
3
[DOC] Update docs
#222
liuzhenqi77
closed
11 months ago
1
[FIX] Fix tests
#221
liuzhenqi77
closed
11 months ago
0
[FIX] Pandas Compatibility, CI, etc
#220
liuzhenqi77
closed
11 months ago
0
Fetching aborted when using abagen.get_expression_data
#219
JohannesWiesner
closed
11 months ago
3
Qustion about the hemisphere filter method in drop_mismatch_samples function (samples_.py L223)
#218
YCHuang0610
opened
1 year ago
0
get_interpolated_map - Key error for certain genes
#217
mjmwalsh
closed
1 year ago
0
how to save the expression file?
#216
qiudashuai1
closed
11 months ago
4
How to get samples*gene matrix before samples merged in brain region ?
#215
jwli28
opened
1 year ago
0
Pandas Compatibility
#214
Ianyliu
closed
11 months ago
1
BUG: TypeError: set_axis() got an unexpected keyword argument 'inplace'
#213
Ianyliu
closed
11 months ago
2
BUG Report: Something wrong with the sample assignment when using Brainnetome atlas(abagen.get_samples_in_mask)
#212
molicaca
opened
1 year ago
0
BUG Report: Something wrong with the sample assignment when using Brainnetome atlas
#211
molicaca
closed
1 year ago
0
Update about using custom parcellation
#210
liuzhenqi77
opened
1 year ago
0
Question about normalization method before differential expressed gene (DEG) analysis.
#209
YCHuang0610
closed
1 year ago
0
Error in running 3.1
#208
lenachenpumc
closed
11 months ago
0
Problems downloading microarray data
#207
njh339
closed
11 months ago
3
There is a error while add parameter "--ibf_threshold 0.5" in command line
#206
276562578
opened
2 years ago
1
How to get expression data based on Destrieux atlas
#205
YH2010
opened
2 years ago
0
[REF] Replace DataFrame.append with pd.concat
#204
ReinderVosDeWael
closed
2 years ago
2
Strange sample numbers/`NaN` expression values returned when using text file-based masks/parcellation
#203
alyssadai
opened
2 years ago
1
[DOC] Update abagen citation
#202
rmarkello
closed
2 years ago
1
Bug with tests/mouse/test_gene.py
#201
lonly7star
opened
2 years ago
0
Issue with relabel_gifti?
#200
ik362
opened
2 years ago
0
[DOC] Adds reference to preprint + updates citation
#199
rmarkello
closed
3 years ago
1
Differential stability values
#198
gkleinman84
closed
3 years ago
4
[REF] Handle atlases w/decimal vox sizes
#197
rmarkello
closed
3 years ago
1
the expression results vary greatly with the same atlas at different space resolution.
#196
Silflame
closed
3 years ago
3
Cerebellum and Corpus callosum in the included examples atlas (DK)
#195
daedhalus
opened
3 years ago
0
Intensity-based probe filtering for each donor separately
#194
daedhalus
closed
3 years ago
2
[REF] Re-orient img in `leftify_atlas()`
#193
rmarkello
closed
3 years ago
1
[FIX] Fixes logger error w/reports
#192
rmarkello
closed
3 years ago
1
[FIX] Error with donor-specific atlases and tolerance=0
#191
rmarkello
closed
3 years ago
1
Donor-specific atlases and tolerance=0 fails for two donors
#190
rmarkello
closed
3 years ago
0
[REF] Fix coordinates of get_samples_in_mask
#189
rmarkello
closed
3 years ago
1
Passing donor masks to `get_samples_in_mask` returns wrong coordinates
#188
rmarkello
closed
3 years ago
0
Output normalized values
#187
HusBunia
closed
3 years ago
2
[ENH] Add geometry/space option to check_atlas
#186
rmarkello
closed
3 years ago
1
[FIX] Fixes 'average' probe selection bug
#185
rmarkello
closed
3 years ago
1
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