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robinmeyers / transloc_pipeline

Translocation Sequencing Pipeline (Alt Lab)
http://robinmeyers.github.io/transloc_pipeline/
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set environment GENOME_DB #6

Open xhh111 opened 5 years ago

xhh111 commented 5 years ago

i have set the GENOME_DB environment at /home/xhh/document/superQ-master/genomes, but when i run the translocpeplines, the system still alarm like following: Error: set environment variable GENOME_DB at /home/xhh/document/superQ-master/transloc_pipeline/bin/TranslocPipeline.pl line 36.

xhh111 commented 5 years ago

my bowtie_index were at ~/document/superQ-master/genomes/bowtie2_indexes, my hg38.fa was at ~/document/superQ-master/genomes/hg38