Combining "bwamem" with actual mapper arguments in the --mapper-args argument does not seem to work (distmap treats the additional args as if they were distmap arguments and complains about them being invalid). Maybe something wrong with arg parsing for the bwa mapper?
Combining "bwamem" with actual mapper arguments in the --mapper-args argument does not seem to work (distmap treats the additional args as if they were distmap arguments and complains about them being invalid). Maybe something wrong with arg parsing for the bwa mapper?