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ropensci
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beastier
R package to run BEAST2
https://docs.ropensci.org/beastier
GNU General Public License v3.0
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Fix CRAN issues
#71
richelbilderbeek
closed
1 month ago
0
Use h1 for versions
#70
olivroy
closed
5 months ago
1
use of dependency archived on CRAN: assertive
#69
maelle
closed
11 months ago
3
Cran check
#68
olivroy
closed
1 year ago
4
Error: length(treelog_line) not equal to 1.
#67
richelbilderbeek
closed
2 years ago
5
Get Codecov to 100% again
#66
richelbilderbeek
opened
2 years ago
0
Fix new CRAN warnings
#65
richelbilderbeek
closed
5 months ago
3
Speed up `run_beast2` calculation
#64
richelbilderbeek
opened
2 years ago
1
Cannot create treelog file 'NA'
#63
richelbilderbeek
opened
2 years ago
5
Test failure on Windows release
#62
maelle
closed
2 years ago
7
How to use Beagle
#61
richelbilderbeek
opened
3 years ago
2
Increase BEAS2 stack size
#60
richelbilderbeek
opened
3 years ago
1
Fix CRAN feedback on v2.4.4
#59
richelbilderbeek
closed
3 years ago
1
Fix: CRAN package beastier -- policy violation
#58
richelbilderbeek
closed
3 years ago
7
Better error message when calling 'get_beast2_example_filename' without BEAST2 installed
#57
richelbilderbeek
closed
3 years ago
0
Prettyprint beast2_options
#56
richelbilderbeek
closed
4 years ago
1
Cannot find bin path
#55
richelbilderbeek
closed
4 years ago
1
How to call tree operator
#54
bowliang
closed
4 years ago
2
BEAST2 run must check if alignment.trees exists?
#53
richelbilderbeek
closed
4 years ago
3
Add 'save_nexus_as_fasta' function
#52
richelbilderbeek
closed
5 years ago
0
is_beast2_input_file should suppress warnings
#51
richelbilderbeek
closed
5 years ago
0
Prevent BEAST2 freeze when overwriting a log file with overwrite set to false
#50
richelbilderbeek
opened
5 years ago
0
Deprecate BEAST2 options for output filenames
#49
richelbilderbeek
closed
5 years ago
1
Use filename of mcmc$.*log
#48
richelbilderbeek
closed
5 years ago
1
Fix script install_beast2 on Mac
#47
richelbilderbeek
closed
4 years ago
1
Allow using BEAST2's example NEXUS and XML files
#46
richelbilderbeek
closed
5 years ago
1
beastier must run on Windows
#45
richelbilderbeek
closed
5 years ago
7
Add 'update_beastier`
#44
richelbilderbeek
closed
5 years ago
1
Add 'beastier_self_test'
#43
richelbilderbeek
closed
5 years ago
2
Add 'upgrade_beast2'
#42
richelbilderbeek
closed
5 years ago
1
Update BEAST2
#41
richelbilderbeek
closed
5 years ago
1
Get BEAST2 version
#40
richelbilderbeek
closed
5 years ago
0
Let beastier write to a folder in the cache, allow to delete it
#39
richelbilderbeek
closed
5 years ago
3
Can beastier run on Peregrine?
#38
richelbilderbeek
closed
5 years ago
2
add docs url to description
#37
jeroen
closed
5 years ago
3
Allow/forbid beast2_working_dir being the same folder as the BEAST2 output files?
#36
richelbilderbeek
closed
5 years ago
2
BEAST2 .log file not created
#35
richelbilderbeek
closed
5 years ago
8
Support Windows when using BEAST2 packages
#34
richelbilderbeek
closed
5 years ago
3
Forbidden to download from https://github.com on CARL cluster
#33
thijsjanzen
closed
5 years ago
12
Fix CRAN build
#32
richelbilderbeek
closed
5 years ago
3
Implement feedback CRAN
#31
richelbilderbeek
closed
5 years ago
0
Pass CRAN CI
#30
richelbilderbeek
closed
5 years ago
1
Process CRAN feedback
#29
richelbilderbeek
closed
5 years ago
1
Fix CRAN build note: Author field differs from that derived from Authors@R
#28
richelbilderbeek
closed
5 years ago
1
Add: 'delete_beast2_files(beast2_options)'
#27
richelbilderbeek
closed
5 years ago
1
Explore to run BEAST2 from temp folder
#26
richelbilderbeek
closed
5 years ago
1
Store BEAST2 input (.xml) filename in beast2_options
#25
richelbilderbeek
closed
5 years ago
1
Check if vignette works
#24
richelbilderbeek
closed
5 years ago
1
Check if citation works
#23
richelbilderbeek
closed
5 years ago
1
Add 'beast2_options' parameter struct
#22
richelbilderbeek
closed
5 years ago
0
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