I last used taxize on September 27th but this morning I am running into an error with the function gnr_resolve. Whenever I provide it with species names that are incorrectly spelled, it spits out the following error:
Error: Internal Server Error (HTTP 500)
I tested it with the code lines from the tutorial on the vignette page and I get the same error. If I supply the names correctly to taxize, it gives me all the other information on the species. But the whole point of the function is to be able to fix errors so I hope it is an easy to get it up and running again ;) However, I saw the thread about taxize being pulled off CRAN during arduous updates so I wonder if it is related and may be too complicated to fix in the near future.
UPDATE: I continued to play around with the function. It can still handle minor errors such as capitals in species names (e.g. Acer Rubrum) and oddities after the genus names (e.g. Crataegus sp.. with two periods).
I last used
taxizeon September 27th but this morning I am running into an error with the functiongnr_resolve. Whenever I provide it with species names that are incorrectly spelled, it spits out the following error:Error: Internal Server Error (HTTP 500)I tested it with the code lines from the tutorial on the vignette page and I get the same error. If I supply the names correctly to
taxize, it gives me all the other information on the species. But the whole point of the function is to be able to fix errors so I hope it is an easy to get it up and running again ;) However, I saw the thread abouttaxizebeing pulled off CRAN during arduous updates so I wonder if it is related and may be too complicated to fix in the near future.UPDATE: I continued to play around with the function. It can still handle minor errors such as capitals in species names (e.g. Acer Rubrum) and oddities after the genus names (e.g. Crataegus sp.. with two periods).
Session Info R version 4.3.2 (2023-10-31 ucrt) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 11 x64 (build 22631) Matrix products: default locale: [1] LC_COLLATE=English_Canada.utf8 LC_CTYPE=English_Canada.utf8 [3] LC_MONETARY=English_Canada.utf8 LC_NUMERIC=C [5] LC_TIME=English_Canada.utf8 time zone: America/Toronto tzcode source: internal attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] taxize_0.9.100.1 loaded via a namespace (and not attached): [1] Matrix_1.6-4 jsonlite_1.8.7 dplyr_1.1.4 compiler_4.3.2 [5] crayon_1.5.2 tidyselect_1.2.0 Rcpp_1.0.11 xml2_1.3.6 [9] urltools_1.7.3 parallel_4.3.2 splines_4.3.2 triebeard_0.4.1 [13] uuid_1.1-1 lattice_0.21-9 TH.data_1.1-2 R6_2.5.1 [17] generics_0.1.3 curl_5.1.0 iterators_1.0.14 MASS_7.3-60 [21] tibble_3.2.1 crul_1.4.2 pillar_1.9.0 rlang_1.1.2 [25] utf8_1.2.4 multcomp_1.4-25 httpcode_0.3.0 cli_3.6.1 [29] magrittr_2.0.3 foreach_1.5.2 digest_0.6.33 grid_4.3.2 [33] rstudioapi_0.15.0 mvtnorm_1.2-4 sandwich_3.0-2 lifecycle_1.0.4 [37] nlme_3.1-163 vctrs_0.6.4 glue_1.6.2 data.table_1.14.8 [41] codetools_0.2-19 zoo_1.8-12 survival_3.5-7 ape_5.8 [45] fansi_1.0.5 conditionz_0.1.0 tools_4.3.2 pkgconfig_2.0.3
```r ```