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rpetit3 / dragonflye

:dragon: :fly: Assemble bacterial isolate genomes from Nanopore reads
GNU General Public License v3.0
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Processing multiple samples #10

Closed tbazilegith closed 2 years ago

tbazilegith commented 2 years ago

Hi Robert, Can dragonflye process multiple samples? How do I indicate that in the output directory ? Is there a flag for sample? Thanks, TJ

rpetit3 commented 2 years ago

Hi TJ,

Dragonflye can pnly process one sample at a time. I think if you would like to process multiple samples it would be best handled by a workflow manager (e.g. Nextflow, Cromwell, etc).

Cheers, Robert

rpetit3 commented 2 years ago

Hi @tbazilegith

Going to go ahead and close this issue, please feel free to reopen!

Cheers, Robert