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rr1859 / R.4Cker

MIT License
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4Cker identifes regions that are outside the chromosome #24

Open iprada opened 7 years ago

iprada commented 7 years ago

Hi, When I did run my analysis with 4C-ker and tryed to upload my data to the UCSC genome browser the genome browser claimed that my bed file end position to some chromosomes were bigger than the end position of the chromosome. To check that, plot the interacting regions in my chromosomes and I got this picture. Right now, I have excluded the region "outside" the chromosome, do you know what is going on there?

I am working with hg19 (canonical) version of the genome

attached the plot, note that in chromosome 18 there is a interacting region outside the chromosome

best, genome

rr1859 commented 7 years ago

Hi, this is quite strange. Can you send the BED file of adaptive windows generated for your samples?

iprada commented 7 years ago

Yes, I will send you on monday.