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rrwick
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Polypolish
a short-read polishing tool for long-read assemblies
GNU General Public License v3.0
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Is it appropriate to use Polypolish to perform multiple rounds of polishing
#27
maoyibo
closed
1 month ago
2
Log output option needed
#26
lborcard
closed
2 months ago
3
Lowering memory usage
#25
zephyris
closed
2 months ago
2
Feature request: Set no/low coverage regions of short reads to N
#24
gwl2
opened
3 months ago
1
When running polypolish filter, "Killed" message after 2nd Sam File gets load
#23
schlaepferp
closed
6 months ago
1
Suggestion for local realignment
#22
YannDussert
closed
7 months ago
1
feat: use bitwsise xor operations for getting orientation
#21
lavafroth
closed
9 months ago
5
feat: faster rounding with bitwise and operation
#20
lavafroth
closed
9 months ago
1
Suggesting the use of `anyhow` or `thiserror`
#19
lavafroth
closed
9 months ago
1
Error: query name contig_1214 in SAM but not in assembly
#18
FA387
closed
1 year ago
1
Error: could not automatically determine read pair orientation
#17
atiaamin2019
closed
10 months ago
9
Core dump......
#16
tnn111
closed
10 months ago
6
Recommendation on how many iterations of polypolish
#15
crarlus
closed
1 year ago
1
Run keeps prematurely ending...
#14
rmormando
closed
10 months ago
3
Changes file
#13
suzukimicro
closed
10 months ago
1
Inquiry
#12
songmj86
closed
1 year ago
1
draft assemblies
#11
hkaspersen
closed
1 year ago
1
More alignments after filtering with polypolish_insert_filter.py
#10
williamsmicrobegenome
closed
2 years ago
1
Bad sam files (Cigar and read don't match) when using BWA but works with bowtie2
#9
UriNeri
closed
1 year ago
3
Docker image for polypolish
#8
maxbranger
closed
2 years ago
1
Preserve original contig names when using Polypolish
#7
jmtsuji
closed
10 months ago
7
Run failed after 14 hours - error not clear
#6
lfurn
closed
2 years ago
1
Are bases with "a depth of zero" corrected?
#5
ilnamkang
closed
2 years ago
1
Memory error while loading metagenome assembly for polishing
#4
ckeuschn
closed
2 years ago
4
Polypolish for metagenomes
#3
jmtsuji
closed
3 years ago
3
loading alignment step: end-to-end filter question
#2
devonorourke
closed
3 years ago
2
ends vs interior
#1
devonorourke
closed
3 years ago
1