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ryanlayer / giggle

Interval data structure
MIT License
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Can't run outside of directory #25

Open mvelinder opened 7 years ago

mvelinder commented 7 years ago

Can't run outside of the directory (that it was indexed in?) 

[u0691312@puhi:rufus_1000g]$ ~/bin/giggle/bin/giggle search -i /uufs/chpc.utah.edu/common/home/u0691312/resources/reference/GTEx_sort_b/ -q 11404X2.bam.generator.V2.overlap.hashcount.fastq.bam.vcf.bed.gz -o -v
##2 223423891   223423891   2:223423891:0:24
giggle: Could not open file 'GTEx_sort/Brain_Hypothalamus_Analysis.v6p.egenes.txt.gz.bed.gz'
: No such file or directory