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ryought
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dbgphmm
Probabilistic genome assembler based on de Bruijn Graph and profile HMM
https://ryought.github.io/dbgphmm/dbgphmm/
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Feat/better gfa
#188
ryought
closed
1 year ago
0
Feat/disallow separate components
#187
ryought
closed
1 year ago
0
Feat/read sam paf output
#186
ryought
closed
1 year ago
0
Feat/real data
#185
ryought
closed
1 year ago
0
Feat/improve draft weight
#184
ryought
closed
1 year ago
0
Fix/slow forward sparse
#183
ryought
closed
1 year ago
0
Feat/freq score
#182
ryought
closed
1 year ago
0
Feat/adaptive warmup
#181
ryought
closed
1 year ago
0
prohibit
#180
ryought
closed
1 year ago
0
Feat/precise extension
#179
ryought
closed
1 year ago
0
Feat/accept multi neighbors
#178
ryought
closed
1 year ago
0
Fix/isolated nodes
#177
ryought
closed
1 year ago
0
Feat/precise map file
#176
ryought
closed
1 year ago
0
Feat/hmm adaptive active nodes
#175
ryought
closed
1 year ago
0
Feat/loopless k shortest
#174
ryought
closed
1 year ago
0
Feat/debug mapping freq
#173
ryought
closed
1 year ago
0
Feat/approximate copy number by freq
#172
ryought
closed
1 year ago
0
Feat/k shortest paths
#171
ryought
closed
1 year ago
0
Feat/k shortest paths
#170
ryought
closed
1 year ago
0
Feat/efficient sampling
#169
ryought
closed
1 year ago
0
Feat/fast prob log exp
#168
ryought
closed
1 year ago
0
Feat/inspect mapping
#167
ryought
closed
1 year ago
0
Fix/euler number infinity
#166
ryought
closed
1 year ago
0
Feat/euler circuit count
#165
ryought
closed
1 year ago
0
Feat/compressed output
#164
ryought
closed
1 year ago
0
Refactor/genome size
#163
ryought
closed
1 year ago
0
Feat/final edit dist
#162
ryought
closed
1 year ago
0
Feat/long cycles
#161
ryought
closed
1 year ago
0
Feat/test inference
#160
ryought
closed
1 year ago
0
Feat/inference v2
#159
ryought
closed
1 year ago
0
Feat/efficient phmm
#158
ryought
closed
1 year ago
0
Feat/finalize multi dbg
#157
ryought
closed
1 year ago
0
Refactor/phmm
#156
ryought
closed
1 year ago
0
Refactor/separate min flow
#155
ryought
closed
1 year ago
0
Feat/multi dbg
#154
ryought
closed
1 year ago
0
Feat/assert forward backward
#153
ryought
closed
1 year ago
0
Feat/large k
#152
ryought
closed
1 year ago
0
Feat/fast deadend remove
#151
ryought
closed
1 year ago
0
Feat/batch test
#150
ryought
closed
1 year ago
0
Feat/inspect greedy behavior
#149
ryought
closed
1 year ago
0
Feat/active nodes hint
#148
ryought
closed
1 year ago
0
Feat/improve sampling in small k
#147
ryought
closed
1 year ago
0
Feat/visualize posterior sampling
#146
ryought
closed
1 year ago
0
Feat/fragment draft
#145
ryought
closed
1 year ago
0
Feat/extension posterior
#144
ryought
closed
1 year ago
0
Feat/posterior sample
#143
ryought
closed
1 year ago
0
Feat/dbg for large data
#142
ryought
closed
1 year ago
0
Feat/serialize dataset
#141
ryought
closed
2 years ago
0
Feat/enumerate elem circuit
#140
ryought
closed
2 years ago
0
Feat/inspect mcmc
#139
ryought
closed
2 years ago
0
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