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sacdallago
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biotrainer
Biological prediction models made simple.
https://biocentral.cloud/app
Academic Free License v3.0
34
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8
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Adding integration for HuggingFace datasets
#124
heispv
opened
1 day ago
1
added options for embeddings dimension reduction
#123
nadyadevani3112
opened
1 week ago
5
Improving logging and one hot encoding embedder
#122
SebieF
closed
1 week ago
0
Improving Code Quality: Adding Docstrings and PEP8 Compliance for the files in Config directory
#121
heispv
closed
2 weeks ago
0
Fixing trainer to use updated parameter name
#120
SebieF
closed
3 weeks ago
0
Improving compute_embeddings function
#119
SebieF
closed
3 weeks ago
0
Add integration with huggingface dataset API
#118
SebieF
opened
3 weeks ago
0
v0.9.4
#117
SebieF
closed
4 weeks ago
0
Hotfix for incorrect precision mode setting
#116
SebieF
closed
1 month ago
0
v0.9.3
#115
SebieF
closed
1 month ago
0
Add bayesian optimization for hyperparameter optimization
#114
SebieF
opened
1 month ago
0
Add automatic dimensionality reduction feature for input vectors
#113
SebieF
opened
1 month ago
2
Adding improved onnx saving and inferencer fixes
#112
SebieF
closed
1 month ago
0
ONNX compatibility problems
#111
mheinzinger
opened
1 month ago
4
Adding support for ProstT5 embedder
#110
SebieF
closed
1 month ago
0
Adding troubleshooting guide
#109
SebieF
closed
2 months ago
0
Publish as a PyPi package
#108
SebieF
opened
2 months ago
0
Version 0.9.2
#107
SebieF
closed
3 months ago
0
Adding saprot embedder example
#106
SebieF
closed
3 months ago
0
Improving embedder model and tokenizer class recognition
#105
SebieF
closed
3 months ago
0
Use logging statements consistently in all places
#104
SebieF
opened
3 months ago
0
Optimize Memory Handling in Embedding Computations and Refactor EmbeddingService
#103
heispv
closed
3 months ago
2
Improving masking mechanisms in CNN and LightAttention models
#102
SebieF
closed
3 months ago
0
Adding ONNX support
#101
SebieF
closed
3 months ago
0
Per-residue predictions differ between batches and single input embeddings
#100
SebieF
closed
3 months ago
0
Use a strategy for sequence preprocessing
#99
SebieF
closed
4 months ago
0
Improve embeddings saving strategy
#98
SebieF
closed
2 months ago
1
elapsed_time_total is misleading
#97
SebieF
opened
4 months ago
0
Improving memory management of embedding calculation
#96
SebieF
closed
4 months ago
0
v0.9.1
#95
SebieF
closed
4 months ago
0
Version 0.9.1
#94
SebieF
closed
4 months ago
0
Look into AI Code suggestions
#93
SebieF
opened
5 months ago
0
Version 0.9.0
#92
SebieF
closed
5 months ago
4
Version 0.8.4
#91
SebieF
closed
5 months ago
0
v0.8.3
#90
SebieF
closed
7 months ago
0
Version 0-8-2
#89
SebieF
closed
9 months ago
0
Version 0.8.1
#88
SebieF
closed
10 months ago
0
Version 0.8.0
#87
SebieF
closed
10 months ago
0
Version 0.7.0
#86
SebieF
closed
1 year ago
0
:woman_scientist: Add LoRA layers to fine-tune protein language models for embeddings calculation
#85
SebieF
opened
1 year ago
4
Renaming wrong test class name to InferencerTests
#84
SebieF
closed
1 year ago
0
Do a sanity check of the inferencer module
#83
SebieF
opened
1 year ago
0
Version 0.6.0
#82
SebieF
closed
1 year ago
0
Version 0.5.1
#81
SebieF
closed
1 year ago
0
Version 0.5.0
#80
SebieF
closed
1 year ago
0
Value Error when Early stopping was engaged
#79
HenrikOtterstedt
closed
1 year ago
2
Version 0.4.0
#78
SebieF
closed
1 year ago
0
Update dependencies
#77
SebieF
closed
1 year ago
0
Create tutorial how-to use a custom embedder
#76
SebieF
opened
1 year ago
0
Create CI and docker image
#75
SebieF
closed
1 year ago
1
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