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saezlab / OmnipathR

R client for the OmniPath web service
https://r.omnipathdb.org/
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Installation error #96

Closed ndrubins closed 9 months ago

ndrubins commented 9 months ago

Hi,

I first tried installing OmnipathR (using devtools::install_github('saezlab/OmnipathR',force=T)) and got the error: object ‘separate_wider_delim’ is not exported by 'namespace:tidyr'

I then updated my tidyr installation and managed to complete the installation of OmnipathR but when trying to load it I still get the same error.

Any idea?

Thanks

deeenes commented 9 months ago

Hello,

separate_wider_delim is part of the current tidyr API: https://tidyr.tidyverse.org/reference/separate_wider_delim.html

Might it be you load the package from a different library than the one you've updated in? I would check and it by .libPaths() and make sure tidyr is the latest version everywhere.

What concerns us, I'll set a minimum version for this dependency.

Best,

Denes

deeenes commented 9 months ago

Might it be your second error is a different one? Actually the tip of master branch wasn't possible to install over the past couple of weeks (see #95), and we've just reverted some commits that caused the issue, it should be fine again.

ndrubins commented 9 months ago

Hi,

Thanks a lot for the quick responses. What worked for me was to update all R packages that OmnipathR listed that are not up to the latest release.

Thanks