saezlab liana-py issues

saezlab / liana-py

LIANA+: an all-in-one framework for cell-cell communication

http://liana-py.readthedocs.io/

GNU General Public License v3.0

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issues

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Spatially informed bivariate metrics in tensor cell2cell and MOFA

#123 Zach-Sten opened 5 days ago
3
Issue with orthologue conversion

#122 chrika2 closed 1 week ago
2
Make sure that bivariate throws an exception when nz_prop leads to no genes being considered

#121 dbdimitrov opened 2 weeks ago
0
pandas name index [BUG]

#120 dbdimitrov opened 2 weeks ago
0
v1.2.1

#119 dbdimitrov closed 2 weeks ago
0
Clarifications Differential analysis vignette

#118 maximelepetit opened 2 weeks ago
1
Bug on Differential Expression Analysis for CCC & Downstream Signalling Networks Vignette

#117 maximelepetit opened 2 weeks ago
1
Import Error: Cannot Import name RandomForestModel

#116 poloarol closed 2 weeks ago
3
GeneA_GeneB gene expression level error

#115 alecdavi opened 3 weeks ago
2
set required Python to `>=3.8`: the `<3.12` causes a broad incompatibility issue in package management

#114 deeenes closed 2 weeks ago
1
Volcano plots for differentially expressed signaling pairs

#113 Zach-Sten opened 1 month ago
2
Improve spatial neighbours function

#112 dbdimitrov closed 2 weeks ago
0
Proper Caching for MetalinksDB & HCOP

#111 dbdimitrov opened 1 month ago
1
1.2.0

#110 dbdimitrov closed 1 month ago
0
KeyError: None when using top_n parameter in li.pl.dotplot

#109 WeipengMO closed 1 month ago
2
Update _tileplot.py for plotnine >=0.13

#108 redst4r closed 1 month ago
1
LR_means, meaning?

#107 soniyalama opened 1 month ago
2
bandwith in multiple samples

#106 SopjudeS closed 1 month ago
4
Please check if appropriate organism/ID type was provided! Allowed proportion (0.98) of missing resource elements exceeded (1.00).

#105 soniyalama closed 1 month ago
10
Sanity check if liana uses the log normalised values

#104 ahmetrifaioglu opened 2 months ago
1
AnnData dtype argument deprecation

#103 dbdimitrov opened 2 months ago
0
Clarify LIANA + MOFA vignette

#102 dbdimitrov closed 1 month ago
2
MOFA talk with multiple samples

#101 nicolebussola closed 3 weeks ago
1
Add a tutorial on GPU-accelerated misty

#100 dbdimitrov opened 2 months ago
0
Export Elbow plot from nmf

#99 dbdimitrov opened 2 months ago
0
v1.1.0

#98 dbdimitrov closed 2 months ago
0
ValueError: Please check if appropriate organism/ID type was provided!

#97 anke-king closed 3 weeks ago
6
Liana on pseduo bulk-sc data data

#96 Marwansha opened 3 months ago
6
code li.pl.dotplot output an disappointing result

#95 Fanyu000 closed 2 months ago
5
Flow chart to guide standard LIANA+ workflows

#94 dbdimitrov opened 3 months ago
0
ZeroDivisionError: float division by zero

#93 anke-king opened 3 months ago
8
Add a check that for the subset of cell types in `li.multi.dea_to_lr`

#92 dbdimitrov closed 2 months ago
0
v1.0.5

#91 dbdimitrov closed 4 months ago
0
Move Vignettes to Another Repo

#90 dbdimitrov opened 4 months ago
0
Magnitude ranks identical in same sample across cell type

#89 ShadHOH closed 4 months ago
2
Question regarding ranking and aggregating from all methods.

#88 Marwansha closed 4 months ago
5
Error with li.mt.rank_aggregate.by_sample

#87 Marwansha closed 3 months ago
2
Update MOFAcell Tutorial

#86 dbdimitrov opened 4 months ago
0
Frequency Chord diagram and Heatmap in Python

#85 maximelepetit opened 5 months ago
10
Getting an error in liana multi df_to_lr

#84 ndrubins closed 3 months ago
15
move LIANA+ plots to matplotlib and seaborn? [User Opinons Welcome]

#83 dbdimitrov opened 5 months ago
5
Generate Union of Causal Net Predictions

#82 dbdimitrov closed 2 months ago
0
Difference on dotplot when running Steady-state Ligand-Receptor inference vignette from the Rank Aggregate section

#81 maximelepetit closed 5 months ago
3
Error in function documentation / vignette

#80 maximelepetit closed 5 months ago
2
v1.0.4

#79 dbdimitrov closed 6 months ago
0
Implement GPU to speed up the CCC caculation in process of rank_aggregate method (CellChat part)?

#78 xflicsu opened 6 months ago
1
Trouble with liana: 'liana.resource' has no attribute 'explode_complexes'

#77 merlevede closed 6 months ago
4
The mouse resource are missing important interactions that should be possible to convert

#76 johan-gson closed 1 month ago
4
Should we exclude CellTalkDB from curated resources list?

#75 dbdimitrov opened 7 months ago
4
External + GPU-enabled MISTy models

#74 dbdimitrov closed 2 months ago
0