Cannot import mapping

[ivanovaos]

Describe the bug Cannot import pypath submodule utils.mapping

---------------------------------------------------------------------------
TypeError                                 Traceback (most recent call last)

----> [6](../preprocess_inputs.py?line=5) from pypath.utils import mapping

File [../anaconda3/envs/../lib/python3.9/site-packages/pypath/utils/mapping.py:70]
     [68](../anaconda3/envs/../lib/python3.9/site-packages/pypath/utils/mapping.py?line=67) import pypath.share.common as common
     [69](../anaconda3/envs/../lib/python3.9/site-packages/pypath/utils/mapping.py?line=68) import pypath.share.cache as cache_mod
---> [70](../anaconda3/envs/../lib/python3.9/site-packages/pypath/utils/mapping.py?line=69) import pypath.internals.maps as maps
     [71](../anaconda3/envs/../lib/python3.9/site-packages/pypath/utils/mapping.py?line=70) import pypath.resources.urls as urls
     [72](../anaconda3/envs/../lib/python3.9/site-packages/pypath/utils/mapping.py?line=71) import pypath.share.curl as curl

File [../anaconda3/envs/../lib/python3.9/site-packages/pypath/internals/maps.py:28]
     [25](../anaconda3/envs/../lib/python3.9/site-packages/pypath/internals/maps.py?line=24) import os
     [27](../anaconda3/envs/../lib/python3.9/site-packages/pypath/internals/maps.py?line=26) import pypath.share.common as common
---> [28](../anaconda3/envs/../lib/python3.9/site-packages/pypath/internals/maps.py?line=27) import pypath.internals.input_formats as input_formats
     [30](../anaconda3/envs/../lib/python3.9/site-packages/pypath/internals/maps.py?line=29) __all__ = ['misc', 'uniprot', 'mirbase', 'basic']
     [33](../anaconda3/envs/../lib/python3.9/site-packages/pypath/internals/maps.py?line=32) misc = {
     [34](../anaconda3/envs/../lib/python3.9/site-packages/pypath/internals/maps.py?line=33)     ('uniprot-sec', 'uniprot-pri'):
     [35](../anaconda3/envs/../lib/python3.9/site-packages/pypath/internals/maps.py?line=34)         input_formats.FileMapping(
   (...)
...
--> [459](../anaconda3/envs/../lib/python3.9/site-packages/pypath/internals/input_formats.py?line=458) def _set_swissprot(self, swissprot: bool | None) -> None:
    [461](../anaconda3/envs/../lib/python3.9/site-packages/pypath/internals/input_formats.py?line=460)     values = {'swissprot': True, 'trembl': False, 'uniprot': True}
    [463](../anaconda3/envs/../lib/python3.9/site-packages/pypath/internals/input_formats.py?line=462)     if swissprot is None:

To Reproduce Steps to reproduce the behavior: from pypath.utils import mapping

Desktop (please complete the following information):

• OS: CentOS linux (BQ cluster)
• Python version: 3.9
• Pypath: the latest pip version

[deeenes]

Is this the full traceback? Where is the exception message?

[ivanovaos]

You are right, last line TypeError: unsupported operand type(s) for |: 'type' and 'NoneType'

[deeenes]

Is your installed pypath up to date, i.e. identical to the current git head? This file already has from __future__ import annotations.