sanger-pathogens ariba issues

sanger-pathogens / ariba

Antimicrobial Resistance Identification By Assembly

http://sanger-pathogens.github.io/ariba/

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issues

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Change "pubmlstspecies" source url

#340 Nilad opened 8 months ago
0
Using Ariba for single-end reads and fasta files

#339 AroobAlhumaidy closed 1 year ago
1
Test run seems to not work properly

#338 marcellobeltrami opened 1 year ago
2
How to determine SNP frequency in multi-copy genes (e.g., 23S rRNA).

#337 slvrshot opened 1 year ago
2
megares_fix

#336 aastha-batta opened 1 year ago
0
Require pysam>=0.21.0; fix mpileup call

#335 martinghunt closed 1 year ago
0
Megares fixes v3

#334 aastha-batta closed 1 year ago
5
Use GitHub actions for tests and builds

#333 martinghunt closed 1 year ago
1
Long read compatibility by tweaking the pipeline

#332 varun8476 opened 1 year ago
1
VFDB contains few genes that are not part of any cluster

#331 PovilasMat opened 1 year ago
2
Failed cluster: cluster

#330 Iqrarshad opened 1 year ago
1
test data seem to need refresh with bowtie2 2.5.0

#329 emollier closed 8 months ago
5
Filter Bad MLST Profiles from PubMLST

#328 Nilad opened 1 year ago
0
mpileup: invalid option -- 't'

#327 Mx-Chpl closed 1 year ago
7
mpileup: invalid option -- 't'

#326 Mx-Chpl closed 1 year ago
2
problems with resfinder and vfdb

#325 fedeserral opened 2 years ago
2
Bug when dealing with insertions and deletions in assemblies

#324 pirale opened 2 years ago
0
input data

#323 daoerxianqiao opened 2 years ago
0
A cluster failed !! Any help would be great

#322 MariaPerezVazquez opened 2 years ago
1
Skip whole genome records

#321 antunderwood closed 1 year ago
4
Enhancements in vfdb_parser.py for VFDB full dataset support

#320 lknegendorf opened 2 years ago
0
Ignore comments column and drop Bio.Alphabet

#319 rpetit3 closed 2 years ago
1
Switch from nosetest -> pytest

#318 nileshpatra opened 2 years ago
0
Incompatible Biopython version in Ariba Docker image

#317 KuangXY3 opened 2 years ago
1
NCBI Data Download Error

#316 hackerzone85 opened 2 years ago
1
fix SPAdes version capture

#315 rpetit3 closed 2 years ago
1
Failure in getting SPAdes version

#314 wanyuac closed 2 years ago
2
NCBI Database Download Error

#313 EmmaMills101 opened 3 years ago
4
Conda package support for Python 3.7+

#312 zmunro opened 3 years ago
4
Support for downloading cgMLST schemes?

#311 slvrshot opened 3 years ago
1
remove email address; move to travis-ci.com

#310 puethe closed 3 years ago
0
ARIBA error in Galaxy

#309 ajkarloss opened 3 years ago
0
Unable to download Escherichia coli#1 and Escherichia coli#2

#308 RotimiDada opened 3 years ago
2
Biopython 1.78 not compatible because of Alphabet missing

#307 besnarda opened 3 years ago
3
ariba.clusters.Error: At least one cluster failed

#306 JFsanchezherrero opened 3 years ago
0
Fix for changes in PubMLST url

#305 rpetit3 closed 3 years ago
1
PubMLST URL change breaks pubmlstget

#304 rpetit3 closed 3 years ago
2
Solution 2 for fixing CARD downloads with getref

#303 rpetit3 closed 3 years ago
2
Solution 1: for fixing CARD download

#302 rpetit3 closed 3 years ago
2
get_ref card is attempting to download RGI

#301 rpetit3 closed 3 years ago
5
LooseVersion' object has no attribute 'version

#300 mabouelk opened 4 years ago
5
How to adapt to single-ended data

#299 feihongloveworld opened 4 years ago
0
README missing SPAdes as a dependency

#298 kapsakcj opened 4 years ago
0
bump version number

#297 puethe closed 4 years ago
0
Modified for MEGARes DB 2.0.0

#296 ajkarloss closed 4 years ago
1
Handle megares 2.0.0

#295 martinghunt closed 4 years ago
4
Megares Downloading Error

#294 ajkarloss closed 4 years ago
4
Nanopore and ARIBA compatibility?

#293 Grandjean-Lapierre-Lab opened 4 years ago
0
Summarising MLST reports?

#292 wanyuac closed 4 years ago
1
Simple question: Can you use assemblies with ariba?

#291 slvrshot closed 3 years ago
0