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sanjeevk42 / CellDetection

Cell detection in holographic images.
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how to use your code #1

Open PapaMadeleine2022 opened 7 years ago

PapaMadeleine2022 commented 7 years ago

hello, I am interest at your code. But how to run your code? can you give some advice？

sanjeevk42 commented 7 years ago

In current implementation, the input data processing is very specific to holographic images of cell. It also expects cell center locations as ground truth. So it cannot be directly used for other problems.

For which problem/dataset do you want to use it?

PapaMadeleine2022 commented 7 years ago

@sanjeevkumar42 Thankyou for your response. I just want to run your code. I have no specific demand.

sanjeevk42 commented 7 years ago

You can download model weights for resnet (https://syncandshare.lrz.de/dl/fiRZVGHv5CCRkJtmSMZtmDDS/resnet23.hdf5) and unet (https://syncandshare.lrz.de/dl/fiAAhUhCLPN8Z2ZeaR9qys5p/unet.hdf5). The weights then can be used to generate prediction maps using script https://github.com/sanjeevkumar42/CellDetection/blob/master/detection/detectors/run_prediction.py

TTgogogo commented 2 years ago

unet.hdf5

Can you share the links of the model weights again? The old links can not be opened.