search

sankaranlab / SCAVENGE

SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.
GNU General Public License v3.0
80 stars 34 forks source link

Missing wiki page #11

Open bschilder opened 1 year ago

bschilder commented 1 year ago

This wiki page seems to be missing its contents:

https://github.com/sankaranlab/SCAVENGE/wiki/%5BSCAVENGE-L%5D-Analysis-for-DNA-mutation-based-lineage-tracing

As a side note, you may want to consider turning your Wiki pages into additional vignettes so they can all be found in one place (GitHub Pages once we merge this PR #10 ), a and are automatically updated and checked for bugs in future versions.

fl-yu commented 1 year ago

Hi Brian, thank you for your help with updates! Good catch! This page is still under construction, and my colleague and I will update it soon.

I also have two favors if you do not mind. I tested the website and get started page which are not working, would you happen to know how to sort it out? The rworkflow fails, if the issue is about the dock, can you help to set up it? Please let me know if you have thoughts on those questions. Also, if you by any chance could help to directly solve these issues, I am happy to add you as a collaborator so that it is easier for you to edit and push. Thank you so much and wish you a wonderful Chrismas!!!

bschilder commented 1 year ago

Hi Brian, thank you for your help with updates! Good catch! This page is still under construction, and my colleague and I will update it soon.

Ok, no problem!

I also have two favors if you do not mind. I tested the website and get started page which are not working, would you happen to know how to sort it out? The rworkflow fails, if the issue is about the dock, can you help to set up it? Please let me know if you have thoughts on those questions.

That's bc the website hasn't successfully built yet. It only builds once all the previous steps in the workflow have passed. Atm, I think the workflow is failing bc it doesn't have the necessary GitHub token (or at least one with the right credentials?). Were you able to set up the following steps? https://github.com/sankaranlab/SCAVENGE/pull/10#issuecomment-1360382957

Also, if you by any chance could help to directly solve these issues, I am happy to add you as a collaborator so that it is easier for you to edit and push.

Try to set up the GitHub Token and adding it as a GitHub Secret and see if that helps. If you're still having trouble with this after that I can try helping more directly.

Thank you so much and wish you a wonderful Chrismas!!!

Thanks, you too! 🎄