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Pipeline PDF #5

Open cpan-chu opened 7 years ago

cpan-chu commented 7 years ago

I made a pretty flow chart for our poster - see attached. Though it outlines what we need to do. I'll go ahead and create separate issues for each thing in preparation for our little hackathon tomorrow.

STAT 540 - Analysis Pipeline.pdf

cpan-chu commented 7 years ago
  1. Data preprocessing
  2. Clustering
  3. Differential expression analysis
  4. Pathway identification given differentially expressed genes
  5. WGCNA modules identification
  6. Differential coexpression analysis
  7. differential connectivity analysis using dna
  8. Test for significance by bootstrapping
  9. Biological interpretation