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sars-cov-2-variants / lineage-proposals

Repository to propose and discuss lineages
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XEC spike diversity issue #2088

Open aviczhl2 opened 1 day ago

aviczhl2 commented 1 day ago

It seems that there is, and will be a lot of spike diversity in XEC. Better gather them in one issue. Only count for branches with more than 2 places.

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### Tasks
- [ ] Branch 1: #2087
- [ ] Branch 2: #1993
- [x] Branch 3: Designated **XEC.1**, #1869
- [ ] Branch 4: XEC+Orf1a:A599T+S:L1224F, Query: G25234T,G2060A,C18657T, 5 seqs, Scotland, USA-OH
- [ ] Branch 5: XEC+Orf1a:A599T+Orf1b:M2322I+S:A688V,Query: G2060A,G20433T,C23625T, 2 seqs, France, Portugal
- [ ] Branch 6: https://github.com/sars-cov-2-variants/lineage-proposals/issues/2029
- [ ] Branch 7: By @cvejris, XEC+Orf1a:A599T+S680F, Query: G2060A, C23601T, 5 seqs, Canada, France, USA
FedeGueli commented 1 day ago

Very good idea, i will try to help. do u prefer direct editing or highlighting in the comments?

I would require also that the lineage has to be sampled at least once in September ( or last 30 days) to avoid dead ends If you agree .

aviczhl2 commented 1 day ago

Very good idea, i will try to help. do u prefer direct editing or highlighting in the comments?

I would require also that the lineage has to be sampled at least once in September ( or last 30 days) to avoid dead ends If you agree .

Sure, you can do direct editing.

cvejris commented 8 hours ago

Branch 7: XEC+Orf1a:A599T+S680F (furin), 5seqs (1xFrance, 1xCanada, 3xUS). Arose 2x independently (all US sequences are separated on the Orf1a:T2274I subbranch). All seqs less than 1 month old. Query: G2060A, C23601T