FL.7 with ORF1a:S443F (nsp2_S263F) and S:H69, V70 deletion (36 seqs, mainly in USA, 6 countries)

[NkRMnZr]

Defining Mutations: FL.7 > T2911G > C1593T(ORF1a:S443F), del21767_21772(Spike_H69del, Spike_V70del) Query: C1593T, T2911G, C21714T (alt: G5720A, C11956T, C21714T, del21767_21772) Earliest seq: 2023-04-23 (EPI_ISL_17646656, Campania, Italy) Latest seq: 2023-08-09 (EPI_ISL_18119825, Texas, USA) Sampled Countries: USA (26: Texas/22; California/1; Florida/1; New Jersey/1; Puerto Rico/1), Switzerland (2), Dominican Republic (2), Italy (1), South Korea (1), Sweden (1)

Genomes:

`EPI_ISL_17646656, EPI_ISL_17655864, EPI_ISL_17818485, EPI_ISL_17818897, EPI_ISL_17955568, EPI_ISL_17955743, EPI_ISL_17955771, EPI_ISL_18034145, EPI_ISL_18057111, EPI_ISL_18057229, EPI_ISL_18057250, EPI_ISL_18057289, EPI_ISL_18057352, EPI_ISL_18057360, EPI_ISL_18057387, EPI_ISL_18057395, EPI_ISL_18057472, EPI_ISL_18057503, EPI_ISL_18057513, EPI_ISL_18057534, EPI_ISL_18057573, EPI_ISL_18067369, EPI_ISL_18098919, EPI_ISL_18099059, EPI_ISL_18099308, EPI_ISL_18104675, EPI_ISL_18107319, EPI_ISL_18109994, EPI_ISL_18110989, EPI_ISL_18119759, EPI_ISL_18119765, EPI_ISL_18119825, EPI_ISL_18121458`

UShER: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_23c48_c66ed0.json?c=gt-nuc_1593&label=id:node_6914647

view from FL.7 polytomy

details

Trivia:

• Be careful using SGTF only to filter BA.2.86, cause there are quite a few XBBs with it.

[NkRMnZr]

Tracking updates:

09-02, 2 seqs from Dominican Republic and USA EPI_ISL_18142843, EPI_ISL_18164179

[FedeGueli]

https://cov-spectrum.org/explore/North%20America/AllSamples/Past3M/variants?aaMutations=Orf1b%3AD54N&nucMutations1=C1593T%2CT2911G%2CC21714T&analysisMode=CompareToBaseline&

sorry i missed this one. it cannot compete.

[NkRMnZr]

slow, closing it.