mtholder
commented
3 years ago Hi, I think that this issue arises from dependency on old behavior in the DendroPy package. Possible solutions would include installing an old version of DendroPy or the suggestions in this issue: https://github.com/smirarab/sepp/issues/13
I hope that helps, Mark
Traceback (most recent call last): File "run_sate.py", line 27, in
from sate.mainsate import sate_main
File "/www/tools/satesrc-v2.2.7-2013Feb15/sate-core/sate/mainsate.py", line 37, in
from sate.satejob import *
File "/www/tools/satesrc-v2.2.7-2013Feb15/sate-core/sate/satejob.py", line 34, in
from sate.treeholder import TreeHolder, resolve_polytomies
File "/www/tools/satesrc-v2.2.7-2013Feb15/sate-core/sate/treeholder.py", line 26, in
from sate.tree import PhylogeneticTree
File "/www/tools/satesrc-v2.2.7-2013Feb15/sate-core/sate/tree.py", line 25, in
from dendropy import convert_node_to_root_polytomy
ImportError: cannot import name convert_node_to_root_polytomy
How to solve this problem