These ideas will be implemented to the 1.7.0-dev branch before the official release.
Ideas that are already implemented:
Add a new command called count-reads which counts the number of sequence reads from FASTQ. Done, see 4692736.
Replace _pretty_taxa() with pname() for the taxa_abundance_box_plot() method. Done. see a4d35f9.
Move the legend_short argument from the _aritst() method to the taxa_abundance_bar_plot() method. Done, 81e4ea8.
Update the distance_matrix_plot() method's handling of input file so that it does not create a temporary file anymore. Done, see a453144.
Update the distance_matrix_plot() method to support density plot. Done, see 2bd9b0e.
Update the summarize command to support the DistanceMatrix semantic type. Done, see ca7a6d4.
Update the summarize command to support the FeatureData[Taxonomy] semantic type. Done, see 62e6a3e.
Fix minor bug in the ordinate() method giving an error when Metadata object is given to the metadata argument. Done, see 0cab2b3.
The where argument in the ordinate() method has been deprecated. From now on, users who wish to perform sample filtration on the feature table should provide filtered metadata. Done, see bf095e0.
Fix the legend_short conflict in the barplot() method, which was introduced in this version. Done, 08f70d0.
These ideas will be implemented to the
1.7.0-devbranch before the official release.Ideas that are already implemented:
Add a new command calledDone, see 4692736.count-readswhich counts the number of sequence reads from FASTQ.ReplaceDone. see a4d35f9._pretty_taxa()withpname()for thetaxa_abundance_box_plot()method.Move theDone, 81e4ea8.legend_shortargument from the_aritst()method to thetaxa_abundance_bar_plot()method.Update theDone, see a453144.distance_matrix_plot()method's handling of input file so that it does not create a temporary file anymore.Update theDone, see 2bd9b0e.distance_matrix_plot()method to support density plot.Update theDone, see ca7a6d4.summarizecommand to support theDistanceMatrixsemantic type.Update theDone, see 62e6a3e.summarizecommand to support theFeatureData[Taxonomy]semantic type.Fix minor bug in theDone, see 0cab2b3.ordinate()method giving an error whenMetadataobject is given to themetadataargument.TheDone, see bf095e0.whereargument in theordinate()method has been deprecated. From now on, users who wish to perform sample filtration on the feature table should provide filtered metadata.Fix theDone, 08f70d0.legend_shortconflict in thebarplot()method, which was introduced in this version.Ideas that will most likely be implemented:
Other ideas: