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sbslee / dokdo

A Python package for microbiome sequencing analysis with QIIME 2
https://dokdo.readthedocs.io
MIT License
42 stars 12 forks source link

can i install without qiime2 in windows #23

Closed khemlalnirmalkar closed 3 years ago

khemlalnirmalkar commented 3 years ago

Hi @sbslee Is it possible to use dokdo through Jupyter notebook in windows without qiime2? Sorry, if I missed something in your documentation section. Thanks,

sbslee commented 3 years ago

@khemlalnirmalkar,

Unfortunately, Dokdo must be run in an environment where QIIME 2 is already installed because Dokdo uses QIIME 2 API extensively. May I ask why you're asking the question? Maybe I can still help.

khemlalnirmalkar commented 3 years ago

@sbslee, I just wanted to avoid switching windows to linux or use a workstation.

sbslee commented 3 years ago

@khemlalnirmalkar,

Got it. If that's the case, there isn't much I can do to help :( Sorry!

khemlalnirmalkar commented 3 years ago

@sbslee no worries, thanks for the quick response,