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sbslee
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pypgx
A Python package for pharmacogenomics (PGx) research
https://pypgx.readthedocs.io
MIT License
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Stuck with the inputs
#143
rajdbs32
opened
10 hours ago
1
How PyPGx deal with missing data
#142
xjq8065524
closed
1 week ago
4
Working with Large BAM files
#141
abheda24
closed
1 month ago
8
run-ngs-pipeline error with CYP2D6
#140
Cyaneiss
closed
1 month ago
8
Simplifying star allele calls to ignore Unknown Function
#139
toddknutson
closed
3 months ago
2
AlleleNotFoundError: ('NAT2', '*12')
#138
toddknutson
closed
3 months ago
3
Incorrect phenotype prediction for wild type diplotypes in CYP1A1, CYP2A6, CYP2C8 and CYP4F2
#137
Svenvdm
closed
3 months ago
2
UGT1A1 Structural variants
#136
Jorisvansteenbrugge
closed
3 months ago
2
correct hg38 coordinate chr10:102830835 A>G
#135
NeiH4207
closed
4 months ago
2
correct hg38 coordinate chr10:102830835 A>G
#134
NeiH4207
closed
4 months ago
2
0.25.0 dev
#133
sbslee
closed
5 months ago
0
Using CRAM in stead of BAM files
#132
ebernsen
closed
4 months ago
5
v 0.24.0 copy-number-profile issue for G6PD and CYP2D6
#131
ChristineHOconnor
closed
5 months ago
2
VCF contig error
#130
evyamor
closed
5 months ago
5
TypeError: DataFrame.merge() missing 1 required positional argument: 'right'` in prepare-depth-of-coverage
#129
Svenvdm
closed
6 months ago
9
PYPGX workflow with premade VCF
#128
evyamor
closed
7 months ago
2
Using bam files created with Illumina's graph reference as an input
#127
yaarau
closed
7 months ago
6
0.24.0 dev
#125
sbslee
closed
8 months ago
0
Recommendations new version and custom recommendations
#124
Bioinf-usr
closed
8 months ago
2
Differences in called star alleles and phenotypes from the same samples: VCF vs BAM as input
#123
NourMarzouka
closed
8 months ago
8
[Errno 95] Operation not supported
#122
Pharmacogenetecist
closed
9 months ago
1
NumberFormatException in beagle
#121
leiste375
closed
10 months ago
4
Long-Read Pipeline - unphased sites in VCF using WhatsHap
#120
sumudu-rangika
closed
10 months ago
9
All G6PD phenotypes are "Indeterminate", even when it seems that some should not be based on the diplotype?
#119
brettva
closed
10 months ago
9
0.23.0 dev
#118
sbslee
closed
11 months ago
0
Major bug introduced in the 0.22.0 version
#117
sbslee
closed
11 months ago
0
0.22.0 dev
#116
sbslee
closed
11 months ago
0
MTHFR.vcf 1kgp pypgx bundle
#115
nbiesot
closed
11 months ago
12
Issue with pypgx.get_recommendation
#114
marcelthieljit
closed
1 year ago
1
Beagle return non-zero exist status
#113
anh151
closed
1 year ago
3
scikit-learn version
#112
shimbalama
closed
1 year ago
1
Data analysis
#111
shermcar
closed
1 year ago
1
Add files via upload
#110
shermcar
closed
1 year ago
0
Nanopore data
#109
kokyriakidis
closed
1 year ago
0
Issue with running a large sample dataset in pypgx
#108
sumudu-rangika
closed
1 year ago
1
Running the entire pipeline
#107
Sahana-selvarathnam
closed
1 year ago
11
estimate-phase-beagle can't open CYP2D6.vcf.gz
#106
NaphatCode
closed
1 year ago
1
Error finding file in ngs run
#105
muhligs
closed
1 year ago
6
Request - if possible - Allelic Depth
#104
Pharmacogenetecist
closed
7 months ago
4
SLCO1B1
#103
vaipathak
closed
1 year ago
3
0.21.0 dev
#102
sbslee
closed
1 year ago
0
create-input-vcf error
#101
sharkLoc
closed
1 year ago
13
[Feature Request] Support custom location of pypgx-bundle files
#100
lexotero
closed
1 year ago
8
CPIC level details
#99
hongsheng-lai
closed
1 year ago
5
importing external CNV calls
#98
pjgreer
closed
1 year ago
2
Haplotypes called for IFNL3
#97
sumudu-rangika
closed
1 year ago
3
ValueError: Different sample sets found in CLI but not API
#96
anh151
closed
1 year ago
10
Additional Pharmacogenes
#95
labdyn
closed
1 year ago
2
CYP2D6 *11 and *17
#94
brettva
closed
1 year ago
2
CYP2D6 *4 calls
#93
Pharmacogenetecist
closed
1 year ago
6
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