This PR modifies the processing pipeline process_data.sh to bypass registration to PAM50 template which is not necessary for the purpose of this project (see #44).
This PR includes:
process_data.sh was modified to bypass PAM50 template, creates labeled segmentations directly (for automatic and manual disc labels).
Manual disc labeling now includes C1-2, C2-3 and C3-4 (instead of only C2-3) --> not that much longer and can be useful.
manual_correction.py now creates the viewer in sct_label_utils for C1-2, C2-3 and C3-4.
Manual labeling instructions in README.md were modified to indicate the user to label C1-2, C2-3 and C3-4 instead of just C2-3.
Description
This PR modifies the processing pipeline
process_data.shto bypass registration to PAM50 template which is not necessary for the purpose of this project (see #44).This PR includes:
process_data.shwas modified to bypass PAM50 template, creates labeled segmentations directly (for automatic and manual disc labels).manual_correction.pynow creates the viewer insct_label_utilsfor C1-2, C2-3 and C3-4.README.mdwere modified to indicate the user to label C1-2, C2-3 and C3-4 instead of just C2-3.Linked issue
Closes #44