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scverse / pertpy

Perturbation Analysis in the scverse ecosystem.
https://pertpy.readthedocs.io/en/latest/
MIT License
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Dialogue feature space #668

Open Nusob888 opened 1 month ago

Nusob888 commented 1 month ago

Description of feature

Many thanks for perpy it is fantastic. Can I request whether you can make the feature space flexible for the perpy implementation of Dialogue?

The original tool allowed users to input a feature space other than pca, but I cannot find this feature in the API.

I can of course trick it into accepting other feature reductions in place of pca but it would be nice to be able to formally add in custom feature spaces so it is more transparent in reproducibility code.

Thanks in advance

Zethson commented 1 month ago

Thank you very much! This is certainly doable. Give us a bit of time because we have a huge TODO list at the moment.