scverse / pertpy

Perturbation Analysis in the scverse ecosystem.
https://pertpy.readthedocs.io/en/latest/
MIT License
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pertpy

fig1

Documentation

Please read the documentation.

Installation

You can install pertpy via pip from PyPI:

pip install pertpy

if you want to use scCODA or tascCODA, please install pertpy as follows:

pip install pertpy[coda]

If you want to use the differential gene expression interface, please install pertpy by running:

pip install pertpy[de]