scverse scanpy_usage issues

scverse / scanpy_usage

Scanpy use cases.

BSD 3-Clause "New" or "Revised" License

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issues

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Assign cell types to clusters

#20 Kristina1234444 opened 2 years ago
0
Export to SPRING error

#19 nroak opened 3 years ago
0
Export to spring issue (AttributeError: 'numpy.ndarray' object has no attribute 'tocsc')

#18 sfortma2 opened 4 years ago
0
Demo Nearest Neighbors and UMAP with CPU parallelization

#17 tomwhite closed 4 years ago
0
RAPIDS GPU demo

#16 tomwhite closed 4 years ago
0
Cannot open louvain.csv.gz

#15 BSharmi opened 5 years ago
2
unable to find genes when export to SPRING object

#14 MichaelPeibo closed 5 years ago
4
memory

#13 ShobiStassen opened 5 years ago
2
Problem with sc.pp.highly_variable_genes()

#12 Leprechaun777 closed 5 years ago
1
updated visualization examples

#11 fidelram opened 5 years ago
3
can't reproduce the tSNE plot of zheng17.

#10 ponnhide closed 5 years ago
4
added example notebook with visualizations

#9 fidelram closed 5 years ago
2
Use calculate_qc_metrics in seurat clustering example

#8 ivirshup closed 5 years ago
1
Incorrect reference doi in seurat.ipynb

#7 le-ander closed 6 years ago
1
can't replicate 170505_seurat/seurat.ipynb notebook

#6 fidelram opened 6 years ago
6
SPRING v2 export

#5 swolock closed 6 years ago
0
score_genes_cell_cycle not running in Scanpy 1.1a1+15.g1570f7c

#4 mbuttner closed 6 years ago
1
Can't download bulk labels in project example zheng17

#3 PhungVanDuy closed 6 years ago
1
Louvain method raises segmentation fault

#2 anilbey closed 6 years ago
8
BPMC data link

#1 hkoohy closed 7 years ago
1