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scverse / squidpy

Spatial Single Cell Analysis in Python
https://squidpy.readthedocs.io/en/stable/
BSD 3-Clause "New" or "Revised" License
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Add SpatialLeiden as clustering method #879

Open timtreis opened 2 months ago

timtreis commented 2 months ago

Basically already (mostly) uses scanpy / squidpy for preproc steps, could wrap remaining python code and provide as method: image

https://www.biorxiv.org/content/10.1101/2024.08.23.609349v1