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seacode
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gmacs
A generic size-structured stock assessment model
https://seacode.github.io/gmacs
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Create R function to read in echo'ed fixed pars
#164
quantifish
opened
8 years ago
0
Should gmr be in its own repository
#163
quantifish
closed
8 years ago
4
Calculation of the OFL and ABC
#162
quantifish
closed
8 years ago
0
calc_pred_catch_out
#161
quantifish
closed
8 years ago
4
clean up src directory
#160
jimianelli
closed
8 years ago
0
Seasionalization
#159
quantifish
closed
8 years ago
0
Qnew
#158
quantifish
closed
8 years ago
0
fixed up the q thing
#157
quantifish
closed
8 years ago
0
"Add CV" approach
#156
jimianelli
closed
8 years ago
7
d3_res_size_comps_out output funky for SMBKC
#155
jimianelli
closed
8 years ago
1
plot_SizeCompRes needs updating
#154
jimianelli
closed
8 years ago
3
Idea for rec_devs
#153
quantifish
closed
8 years ago
0
Two sex model has no information on first sd_log_recruits declared
#152
jimianelli
opened
8 years ago
0
selectivity from BBRKC Assessment (Zheng et al 2015)
#151
jimianelli
closed
7 years ago
4
Plot size comps updates?
#150
jimianelli
opened
8 years ago
3
Spelling correction
#149
Undo1
closed
8 years ago
0
add some checks to end of run
#148
quantifish
opened
8 years ago
1
make test from root directory fails
#147
jimianelli
closed
7 years ago
2
Sel changes
#146
quantifish
closed
9 years ago
0
DoubleNormal selectivity
#145
quantifish
closed
7 years ago
1
How to deal with Selectivity
#144
quantifish
closed
8 years ago
8
Size comp changes
#143
quantifish
closed
9 years ago
1
warning when compiling tail compression
#142
quantifish
closed
9 years ago
1
starting with converged parameter file as input fails
#141
jimianelli
opened
9 years ago
7
Size composition naming convention
#140
jimianelli
closed
9 years ago
1
Script that highlights when control or data input files change
#139
jimianelli
opened
9 years ago
0
Ability to specify size bins that are smaller than the data bins
#138
quantifish
opened
9 years ago
0
The classes for selectivity and nloglike need tidying up
#137
quantifish
opened
9 years ago
1
Plots to do:
#136
quantifish
opened
9 years ago
1
Need to estimate discards for years that we dont have data...
#135
quantifish
closed
9 years ago
3
Problems with the growth/size tranition plots
#134
quantifish
closed
9 years ago
3
Catchability priors code unfinished
#133
quantifish
closed
9 years ago
3
Move calc_growth_increments
#132
quantifish
closed
8 years ago
0
calc_fishing_mortality
#131
quantifish
closed
8 years ago
2
Growth probabilities
#130
quantifish
closed
8 years ago
0
Develop testing framework
#129
quantifish
opened
9 years ago
0
Get raw data for
#128
quantifish
closed
9 years ago
0
make rec_devs sex specific as an option
#127
jimianelli
opened
9 years ago
1
Consider shifted environmental options
#126
quantifish
opened
9 years ago
1
Environmental indices (e.g., affecting survey catchability) should be considered.
#125
jimianelli
closed
9 years ago
0
Selectivity plots x-axes need fixing
#124
quantifish
closed
9 years ago
2
tail compression seems unaffected by predictions in plots
#123
jimianelli
opened
9 years ago
0
Add maturity at size plot
#122
quantifish
closed
9 years ago
1
wiki "trouble shooting" guide
#121
jimianelli
opened
9 years ago
1
negloglike class isn't deleted
#120
jimianelli
closed
9 years ago
1
Initializing the model at unfished equilibrium conditions
#119
quantifish
closed
8 years ago
0
Likelihood can be optimized
#118
quantifish
closed
8 years ago
3
make read-write function in R for data and ctl files...
#117
jimianelli
closed
9 years ago
0
Missing Figures in Gmacs Beamer Presentation
#116
smartell
closed
9 years ago
3
Random-walk natural mortality option not working
#115
quantifish
closed
9 years ago
1
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