segrelab / comets

Computation of Microbial Ecosystems in Time and Space
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Periodic media concentrations #22

Closed sulheim closed 4 years ago

sulheim commented 4 years ago

This pull request adds a new feature to comets: creating periodic medium concentrations. The current use case is simulating day / night cycles.

During testing of the source code I stumbled across a unrelated bug in FBAOptimizerGurobi caused by a model metabolite paricipating in no reactions in the model file.