selkamand ggoncoplot issues

selkamand / ggoncoplot

Easily Create Interactive Oncoplots

https://selkamand.github.io/ggoncoplot/

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Readme Fixes

#145 selkamand opened 1 month ago
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143 docs add a clearer statement of need to the readme

#144 selkamand closed 1 month ago
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DOCS: Add a clearer statement of need to the README

#143 selkamand closed 1 month ago
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Joss prereview

#142 selkamand closed 2 months ago
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JOSS: fix missing DOIs

#141 selkamand closed 2 months ago
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Add CONTRIBUTING.md

#140 selkamand closed 2 months ago
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Dev: Joss Paper Updates

#139 selkamand closed 2 months ago
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docs: v0.6 paper

#138 selkamand closed 2 months ago
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plotsize_tmb_rel_height should default to 0 if the plot isn't shown

#137 selkamand opened 3 months ago
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docs: v0.6 of ggoncoplot JOSS paper

#136 selkamand closed 3 months ago
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docs: fixed interaction with other packages text

#135 selkamand closed 3 months ago
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Interactivity fixed and redundant code cleanup

#134 selkamand closed 3 months ago
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BREAKING CHANGE: .data argument -> data

#133 selkamand closed 3 months ago
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127 add community contributions section to readme

#132 selkamand closed 3 months ago
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Fix vignette text

#131 selkamand closed 3 months ago
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feat: added fontsize_metadata_text option

#130 selkamand closed 3 months ago
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Expose gg1d fontsize_y_text through options$fontsize_metadata_text

#129 selkamand closed 3 months ago
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fix: updated gg1d::gg1d_plot call to gg1d::gg1d()

#128 selkamand closed 3 months ago
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Add community contributions section to readme

#127 selkamand closed 3 months ago
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update gg1d_plot to gg1d

#126 selkamand closed 3 months ago
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Documentation + Metadata Options Update

#125 selkamand closed 3 months ago
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Equalize text size of ggoncoplot + gg1d metadata legends

#124 selkamand closed 3 months ago
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Add option to drop guide_titles

#123 selkamand closed 3 months ago
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Add numeric metadata arg to the readme examples

#122 selkamand opened 3 months ago
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Once gg1d verbosity issue is resolved, set verbose option of gg1d call to low

#121 selkamand closed 3 months ago
1
make beautification of guide titles optional

#120 selkamand opened 3 months ago
1
default ranks function name typo

#119 selkamand closed 3 months ago
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rename .data argument to data

#118 selkamand closed 3 months ago
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add issues solved github badge

#117 selkamand closed 3 months ago
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113 add option to remove legend

#116 selkamand closed 3 months ago
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Add section on composing custom plots with ggoncoplot to manual

#115 selkamand closed 3 months ago
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111 add tnbc rnaseq tsne vs oncoplot interactivity example to the vignette

#114 selkamand closed 4 months ago
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Add option to remove legend

#113 selkamand closed 3 months ago
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Paper

#112 selkamand closed 4 months ago
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add TNBC rnaseq tsne vs oncoplot interactivity example to the vignette

#111 selkamand closed 4 months ago
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Add BRCA oncoplot to vignette

#110 selkamand closed 3 months ago
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Explicitly pass options to gg1d so ggoncoplot `...` arg can be dropped and options exposed through ggoncoplot_options

#109 selkamand closed 3 months ago
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expose genebar x axis font size controls

#108 selkamand opened 4 months ago
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Even when TMB axis is not logged colours mutationtype colours are not automatically being added

#107 selkamand opened 4 months ago
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Dev

#106 selkamand closed 4 months ago
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Marginal Gene Barplot Breaks Too Dense

#105 selkamand closed 4 months ago
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add section to vignette about saving the oncoplot to different formats

#104 selkamand closed 4 months ago
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docs: paper first-draft

#103 selkamand closed 4 months ago
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add paper folder to Rbuildignore

#102 selkamand closed 4 months ago
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Update readme link to link to new manual vignette not quick_start

#101 selkamand closed 4 months ago
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Create a JOSS paper

#100 selkamand closed 4 months ago
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Dev

#99 selkamand closed 4 months ago
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80 add acknowledgements + update license ahead of release

#98 selkamand closed 4 months ago
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rename vignette

#97 selkamand closed 4 months ago
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Add a vignette example describing how you would use ggoncoplot with expression data / microbiome data

#96 selkamand opened 4 months ago
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