VCF with multiple chromosomes

seppinho / nft-vcf

nf-test plugin to provide support for VCF files.

MIT License

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VCF with multiple chromosomes #4

Closed LouisLeNezet closed 4 months ago

LouisLeNezet commented 4 months ago

Hi,

I'm using nft-vcf for nf-core and it seems that we can't use it on vcf with multiple chromosomes. Error: The provided VCF file contains more than one chromosome. Please split your input VCF file by chromosome Is there a technical reason for this ?

It would be really nice to be able to use it on such vcf.

Thanks !

seppinho commented 4 months ago

Good point. No its not, I'll remove this check.

seppinho commented 4 months ago

Can you check if the latest version works for you?

LouisLeNezet commented 4 months ago

Hi ! It does work well 😄 Thanks for the quick update !

seppinho commented 4 months ago

Awesome, let me know if other things are missing which would simplify the usage.