seqeralabs / conda-recipes

Conda recipes for the Eel project
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Add fq package #18

Open pditommaso opened 1 year ago

pditommaso commented 1 year ago

The nf-core/rnaseq pipeline uses the fq package.

The goal of this issue is to include in this channel the ARM build.

Adding the x64 version for reference

https://github.com/bioconda/bioconda-recipes/tree/master/recipes/fq

drpatelh commented 1 year ago

Here are some others that will need to be included in our Seqera conda channel if we want to use v3.12.0 of nf-core/rnaseq:

Existing recipes that need to be bumped

New recipes

There may be others that come up. Difficult for me to know without testing.

pabloaledo commented 1 year ago

I've uploaded fq@0.9.1, umi_tools@1.1.4 and fastp@0.23.4 for the moment. Regarding bioconductor-dupradar, bioconductor only keeps the last version in their servers, which is currently 1.30.0, so this one is simpler to compile, and I've uploaded that version to our channel. Can we test if that newer version also works?.

pditommaso commented 1 year ago

Nice!

pditommaso commented 1 year ago

Can we test if that newer version also works?

I may test later today or tomorrow