Open pditommaso opened 1 year ago
Here are some others that will need to be included in our Seqera conda channel if we want to use v3.12.0 of nf-core/rnaseq:
bioconductor-dupradar
1.28.0salmon
1.10.1samtools
1.17fastp
0.23.4fq
0.9.1umi_tools
1.1.4There may be others that come up. Difficult for me to know without testing.
I've uploaded fq@0.9.1
, umi_tools@1.1.4
and fastp@0.23.4
for the moment. Regarding bioconductor-dupradar
, bioconductor only keeps the last version in their servers, which is currently 1.30.0, so this one is simpler to compile, and I've uploaded that version to our channel. Can we test if that newer version also works?.
Nice!
Can we test if that newer version also works?
I may test later today or tomorrow
The nf-core/rnaseq pipeline uses the fq package.
The goal of this issue is to include in this channel the ARM build.
Adding the x64 version for reference
https://github.com/bioconda/bioconda-recipes/tree/master/recipes/fq