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shawnzhangyx
/
PePr
a peak-calling and differential analysis tool for replicated ChIP-Seq data
GNU General Public License v3.0
37
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Could not retrieve index file for abc.sorted_byname.bam
#37
flzh628
closed
6 months ago
3
Missing tags?
#36
Apteryks
closed
2 years ago
1
Question about differential analysis
#35
re2srm
closed
3 years ago
2
PePr pooling of replicates or individual calling of peaks
#34
abhisheksinghnl
closed
5 years ago
3
Python3: index-based access to data view
#33
ptrebert
closed
6 years ago
2
Omicspedia Unreachable
#32
aakashsur
closed
6 years ago
2
RuntimeWarning
#31
aakashsur
opened
6 years ago
1
array init fails in Python3
#30
ptrebert
closed
6 years ago
4
Help needed
#29
joshuabhk
closed
7 years ago
7
Running PePr with Input and IgG controls
#28
yeroslaviz
closed
6 years ago
1
KeyError in post_process_PePr.py
#27
alacrity8
closed
7 years ago
3
Error during peak-calling (KeyError)
#26
c-guzman
closed
7 years ago
6
libhts.so.1 import error
#25
abalter
closed
7 years ago
5
bioconda release
#24
jasper1918
closed
7 years ago
3
chrY error
#23
will-NYGC
closed
8 years ago
7
Chromosome names require leading "chr"
#22
robertamezquita
closed
7 years ago
1
ATAC-seq/DNase-seq Analysis
#21
robertamezquita
opened
8 years ago
13
PePr differential binding analysis killed
#20
nam10san
closed
7 years ago
4
ImportError: No module named PePr
#19
AlicePsyche
closed
7 years ago
5
ValueError: negative dimensions are not allowed
#18
mictadlo
closed
8 years ago
3
chip3 and input3 parameters adding
#17
mictadlo
closed
7 years ago
1
Remove chip1 / chip2 intersecting regions
#16
rcavalcante
opened
8 years ago
3
Shawnzhangyx readme patch 1
#15
shawnzhangyx
closed
8 years ago
0
Galaxy wrapper for PePr
#14
mictadlo
opened
8 years ago
5
website is unsafe
#13
plijnzaad
closed
8 years ago
2
q-value greater than 1.
#12
shawnzhangyx
closed
8 years ago
1
Feature Addition: Output directory parameter
#11
rcavalcante
closed
8 years ago
1
Setuptools patch
#10
rjeschmi
closed
8 years ago
3
Modify setup.py a bit
#9
rjeschmi
closed
8 years ago
3
add support for paired-end reads
#8
shawnzhangyx
closed
8 years ago
4
add an error handler
#7
shawnzhangyx
closed
8 years ago
0
numpy/scipy versions
#6
daler
closed
9 years ago
4
postprocessing issue
#5
shawnzhangyx
closed
9 years ago
0
the sam file parser for bitwise flag is wrong.
#4
shawnzhangyx
closed
8 years ago
1
add support for the same input files to be used for both chip groups
#3
shawnzhangyx
closed
9 years ago
0
bug report as of july 29, 2014
#2
shawnzhangyx
closed
10 years ago
0
Bug fix and improvement as of June 21, 2014
#1
shawnzhangyx
closed
8 years ago
0