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sherman5 / RVS

Computes estimates of the probability of related individuals sharing a rare variant.
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Parallel multipleFamilyCalculations #6

Open PhillBenoit opened 5 years ago

PhillBenoit commented 5 years ago

I changed 3 sapply to parSapply to try and help @klmartinez run her experiments on the U of A HPC. This allowed a small sample of her work to run in 5 minutes instead of 40.

sherman5 commented 5 years ago

Thank you for submitting this. I'll be reviewing this and working on some related fixes throughout this week.

PhillBenoit commented 5 years ago

Just FYI, I was able to calculate her full dataset in just under 34 hours with this code. Previously, it ran for 10 days on our system before being cut off by our job scheduler. (we have a 10 day max runtime)