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shingocat
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lrscaf
TGS scaffolding
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Can the -m4 format generated by BLASR be replaced by the sam format generated by BWA?
#37
LGliuliuliu
closed
2 years ago
0
lrscaf throws an error with ont mapped reads from minimap2
#36
andrewkern
opened
2 years ago
3
about gaps
#35
xieyy46
closed
2 years ago
1
might be inconsistent log messages?
#34
Gjocund
opened
3 years ago
1
Is <tips_length> a wrong parameter name
#33
Gjocund
closed
2 years ago
1
Launching error and empty edges
#32
khush876
closed
2 years ago
1
Nanopore alignment with PACBIO
#31
khush876
closed
2 years ago
1
duplicated contigs in scaffolds in human assembly. assembly size goes up to 3.24Gbp from 2.85Gbp
#30
alekseyzimin
opened
3 years ago
2
Null alignment file
#29
JuliaLopezDelgado
closed
2 years ago
1
Inability to parse iqrt parameter
#28
tararickman
closed
3 years ago
2
Parameters for contiguous assemblies
#27
A-J-F-Mackintosh
closed
3 years ago
2
error while running LRscaff
#26
flegeai
closed
3 years ago
1
Can lrscaf accept 'scaffolds' as input instead of 'contigs'?
#25
xiekunwhy
closed
3 years ago
1
agis.ps.file.M4Reader error and PathBuilder error
#24
wufabai
closed
3 years ago
1
nodePaths.info could not be created LRScaf-1.1.10
#23
igorantoshechkin
closed
3 years ago
2
More duplication ?
#22
ptranvan
closed
3 years ago
2
Reading gzipped PAFs
#21
andreaswallberg
closed
4 years ago
1
agis.ps.file.MMReader and PathBuilder ? errors
#20
faguil
closed
4 years ago
2
Output and parameters
#19
ptranvan
closed
4 years ago
5
Contig used more than once ?
#18
ptranvan
closed
4 years ago
3
[ ERROR ] PathBuilder ： The Edges could not be empty
#17
LisaBlazek
closed
4 years ago
1
Composition of scaffolds ?
#16
ptranvan
closed
4 years ago
1
PacBio raw reads or corrected ?
#15
ptranvan
closed
4 years ago
1
LRScaf-1.1.8 stuck at "Finding repeats"
#14
bvaldebenitom
closed
4 years ago
3
error following tutorial
#13
nsmackler
closed
4 years ago
5
Example configuration deletes assembly and minimap results
#12
jguhlin
closed
4 years ago
1
Long stretches of homopolymers
#11
francicco
closed
3 years ago
26
LRScaf running slow
#10
Lutri22
closed
5 years ago
4
[ ERROR ] agis.ps.graph.DirectedGraph
#9
MeiFangLin
closed
5 years ago
2
Error PathBuilder
#8
MeiFangLin
closed
5 years ago
2
Troubleshooting errors
#7
000generic
closed
4 years ago
13
How to improve continuity of scaffolds?
#6
wangshun1121
closed
5 years ago
7
What does mmcm mean?
#5
wangshun1121
closed
5 years ago
1
Ns after Scaffolding contigs containing no Ns
#4
sanjitsbatra
closed
5 years ago
3
error of The Edges could not be empty
#3
tiramisutes
closed
5 years ago
11
args error
#2
orangeSi
closed
6 years ago
3
What tools to compile？
#1
cnsms
closed
6 years ago
1