Simulation fails with error when using standard KaSim (1.08)

[donal-s]

When attempting to simulate using KaSim 1.08 downloaded from https://github.com/downloads/jkrivine/KaSim/KaSim_1.08_linux_x86 , I get the following error:

./KaSim_1.08_linux_x86: unknown option `--eclipse'. KaSim 1.08_210711: Usage is KaSim -i input_file [-e events | -t time] [-p points] [-o output_file]

--version display kaSim version -i name of a kappa file to use as input (can be used multiple times for multiple input files) -e Number of total simulation events, including null events (negative value for unbounded simulation) -t Max time of simulation (arbitrary time unit) -p Number of points in plot -o file name for data output -d Specifies directory name where output file(s) should be stored -load-sim load simulation package instead of kappa files -make-sim save kappa files as a simulation package -im produces the influence map of the model -flux will measure activation/inhibition fluxes during the simulation --cflow Causality analysis mode --dot-output (no argument required) Dot format for outputting snapshots --implicit-signature Program will guess agent signatures automatically -seed Seed for the random number generator --compile Display rule compilation as action list --debug Enable debug mode --backtrace Backtracing exceptions -rescale-to Rescale initial concentration to given number for quick testing purpose -help Display this list of options --help Display this list of options

Is there a non-standard build of KaSim required to simulate using Kide, or am I being really dense ?

[jkrivine]

Has this issue been fixed ?

[donal-s]

To be honest, I was waiting for a downloadable executable for KaSim, as thats what the beta test group would be using... not all of them would be capable of building their own KaSim.

Cheers

Donal

On 28/09/11 13:30, Krivine wrote:

Has this issue been fixed ?

[donal-s]

Simulation with KaSim 2.01 (on linux) works ok here. Suggest closing the issue.