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Tutorials on evolutionary genomics
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freq.py send many error and not calculate allele frequencies #5

Open RonOLab opened 4 months ago

RonOLab commented 4 months ago

Hello, Can you tell me, please, what is wrong with the attached files?

example_geno.txt punica_pop.txt

running python3 genomics_general-master/freq.py -g data/Punica_SNPs_hw.geno.gz -p G1 -p G2 -p G3 -p Outgroup --popsFile data/punica_pop.txt --target derived -t 10 -o data/punica_freq.tsv.gz, I get many errors. It runs but the allele proportions are not calculated. Thanks, Ron

RonOLab commented 4 months ago

I believe I found the cause. There were asterisks / in some sites. It was challenging to find since nothing in the error message implies this. Kindly, Ron