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skjerns / 3dprintedbrain_docker

3D print your brain from a T1 MRI image using Docker.
BSD 3-Clause "New" or "Revised" License
20 stars 3 forks source link

: invalid option #6

Closed yannnnay closed 3 weeks ago

yannnnay commented 3 weeks ago

Hi,

I have been running into the same issue everytime i try to run the script 3dprintedbrain. "docker run 3dprintedbrain subject.nii : invalid option" I have been trying different ways, making sure subject.nii was in the folder. I tried to directly run the command from inside the container. I tried different syntax in my powershell using " " for paths but still it doesn't work.

Have you ever run into a simular issue ?

skjerns commented 3 weeks ago

What exactly is the output you get?

This sounds like a PowerShell issue?

skjerns commented 3 weeks ago

Also this is not the correct command, the are parameters missing

Have you tried Chagpt? It can do miracles with helping bash and ps scrpts

yannnnay commented 3 weeks ago

Thanks for the quick answer: I get the following message

docker run -it -v .\/:/opt/share 3dprintedbrain subject.nii : invalid option I tried to install/run the docker on two different computers and i get a similar error. I tried chatGPT but nothing has worked so far. I will keep yo updated

skjerns commented 3 weeks ago

Did you try using

docker run -it -v .\/:/opt/share 3dprintedbrain subject.nii

As it is stated in the Readme for Windows?

yannnnay commented 3 weeks ago

Yes of course. The only way i managed to make it run is going to the container, installing dos2unix and convert the script with it.

skjerns commented 3 weeks ago

Ah interesting. If you want to do a PR feel free to improve the repo :)