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COVID diagnosis and DNA/RNA testing: Support VSAC Valueset definitions #8

Closed comorbidity closed 1 year ago

comorbidity commented 1 year ago

Diagnosis ICD10 and SNOMED http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1248.139 http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1248.138 https://cts.nlm.nih.gov/fhir/res/ValueSet/2.16.840.1.113762.1.4.1032.114 https://cts.nlm.nih.gov/fhir/res/ValueSet/2.16.840.1.113762.1.4.1029.371

PCR, DNA, RNA, Nucleic Acid Amplification Tests

SARS Coronavirus 2 PCR, Qualitative and Quantitative https://cts.nlm.nih.gov/fhir/res/ValueSet/2.16.840.1.113883.3.3616.200.110.102.5050

SARS Coronavirus 2 RNA, Qualitative https://cts.nlm.nih.gov/fhir/res/ValueSet/2.16.840.1.113883.3.3616.200.110.102.5053

Using LOINC and SNOMED-CT to identify and report SARS-CoV-2 test results in electronic reporting systems will facilitate timely and quality data reporting to state and federal public health agencies. These codes are maintained by the CDC at https://www.cdc.gov/csels/dls/sars-cov-2-livd-codes.html https://cts.nlm.nih.gov/fhir/res/ValueSet/2.16.840.1.113762.1.4.1114.13

All COVID tests https://cts.nlm.nih.gov/fhir/res/ValueSet/2.16.840.1.113762.1.4.1146.1142 (for testing only: too wide a net)

Issue related to https://github.com/smart-on-fhir/cumulus-library-core/issues/42

comorbidity commented 1 year ago

See also https://www.nlm.nih.gov/vsac/support/usingvsac/covid19valuesets.html 2.16.840.1.113762.1.4.1146.1034 Negative

comorbidity commented 1 year ago

See

https://github.com/smart-on-fhir/cumulus-library-covid/blob/8-valueset-diagnosis-pcr-rna-naa/cumulus_library_covid/covid_symptom/define_pcr.sql

https://github.com/smart-on-fhir/cumulus-library-covid/blob/8-valueset-diagnosis-pcr-rna-naa/cumulus_library_covid/covid_symptom/valueset_pcr_negative.json

https://github.com/smart-on-fhir/cumulus-library-covid/blob/8-valueset-diagnosis-pcr-rna-naa/cumulus_library_covid/covid_symptom/valueset_pcr_positive.json