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smdabdoub / kraken-biom

Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).
MIT License
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Errors while using kraken-biom #17

Open pdhrati02 opened 2 years ago

pdhrati02 commented 2 years ago

Hi, I used pip install git+http://github.com/smdabdoub/kraken-biom.git Following which I tried kraken-biom on 2 samples for trial: kraken-biom C1C_S92_krak_out.txt C1T1_S39_krak_out.txt and also kraken-biom C1C_S92_krakenreport.txt C1T1_S39_krakenreport.txt

In both cases I ended up getting the following error: TypeError: expected string or bytes-like object

My kraken report file is a mpa style file while the output is standard format.

Any help would be appreciated. Thank you. DP