smirarab sepp issues - Githubissues

smirarab / sepp

Ensemble of HMM methods (SEPP, TIPP, UPP)

GNU General Public License v3.0

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Fix seppJsonMerger.jar

#138 sjanssen2 opened 4 days ago
1
add functional test

#137 sjanssen2 opened 4 days ago
1
Port unit tests from Travis to Github Actions

#136 sjanssen2 closed 4 months ago
3
start porting test from Travis to Github-Actions

#135 sjanssen2 closed 6 months ago
0
java.lang.NumberFormatException: null when running sepp

#134 elena-iri closed 7 months ago
3
port Travis tests to github Actions

#133 sjanssen2 closed 4 months ago
2
Attribute error when running UPP

#132 wasade closed 4 months ago
13
Conda installation for Python 3.11

#131 mloberme opened 1 year ago
2
Python3.10 issue: ImportError: cannot import name 'Mapping' from 'collections'

#130 WWz33 closed 3 months ago
2
Fixed dendropy to the compatible version

#129 jgolob closed 3 months ago
1
UPP hangs with no error or info given

#128 aravenscraft opened 1 year ago
0
UPP cannot locate Dendropy

#127 aravenscraft closed 1 year ago
1
Track internal dendropy reorganization

#126 mmore500 closed 9 months ago
19
Dendropy v4.6.0 causing SEPP to break

#125 berkelem closed 3 months ago
10
Please consider dropping obsolete "U" mode passed to open()

#124 pgrt closed 3 months ago
1
missing reference files ?

#123 EricDeveaud closed 3 months ago
1
Update alignment.py

#122 CleoCordeiro closed 2 years ago
0
Packaged pplacer produces segmentation fault

#121 rpetit3 opened 2 years ago
4
Unable to configure sepp ?

#120 sunnyEV closed 3 months ago
4
UPP on highly fragmentary protein sequences

#119 felbecker closed 2 years ago
4
sepp.scheduler.JobError:

#118 ncolaian closed 2 years ago
0
DeprecationWarning importing Mapping from collections directly

#117 panlinux closed 3 months ago
1
-M option new functionality

#116 balabanmetin closed 2 years ago
1
Depends on python=3.1 ?

#115 geboro closed 3 months ago
4
Problem with SEPP on conda?

#114 berkelem closed 3 years ago
5
UPP gets stuck building the backbone alignment

#113 kleempoel closed 3 years ago
4
Directory cleanup concurrent execution

#112 gillichu closed 3 years ago
0
SEPP/UPP: better log

#111 smirarab closed 3 months ago
1
4.5.1: small fixes

#110 smirarab closed 3 years ago
0
Manual install of Sepp fails because of broken symlinks to TIPP files

#109 Gullumluvl closed 3 years ago
5
4.5.0: Remove TIPP

#108 smirarab closed 3 years ago
0
error running ./sepp-package/run-sepp.sh sepp-package/test.frag test-gg

#107 zeugir closed 3 years ago
10
Unable to bin any fragments!

#106 nick-youngblut closed 3 years ago
4
BLAST query error: CFastaReader

#105 nick-youngblut closed 3 years ago
3
No such file or directory => os.makedirs(outdir)

#104 nick-youngblut closed 3 years ago
1
Tipp2

#103 ekmolloy closed 3 years ago
0
TIPP2 doesn't work with SEPP bioconda recipe

#102 nick-youngblut opened 3 years ago
6
4.3.21 small bug fix

#101 smirarab closed 3 years ago
0
4.3.20: bump the setup version number

#100 smirarab closed 3 years ago
0
Alignmentimp

#99 smirarab closed 3 years ago
0
4.3.19: symfrac enabled

#98 smirarab closed 3 years ago
0
4.3.18: improve upp speed for gappy alignments

#97 smirarab closed 3 years ago
0
AttributeError: 'Namespace' object has no attribute 'pasta'

#96 Omdeno opened 4 years ago
4
4.3.17: more py 3.8 compatibility

#95 smirarab closed 4 years ago
0
4.3.16: refactor to reduce warnings

#94 smirarab closed 4 years ago
0
Pgrt looking for integer

#93 smirarab closed 4 years ago
0
Full length range to select backbone sequences

#92 uym2 closed 4 years ago
0
activate py3.8

#91 sjanssen2 closed 4 years ago
1
Looking for the index of edge_num

#90 pgrt closed 4 years ago
0
Fiddling aroung addAll for Json collections

#89 pgrt closed 4 years ago
0