smith-chem-wisc / MetaMorpheus

Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
MIT License
91 stars 46 forks source link

[WIP]New PEP calculation #2384

Closed Alexander-Sol closed 4 months ago

Alexander-Sol commented 4 months ago

This takes Shortreed's PR 2376 and redoes filtering to make it more readable and not break so many tests.

It's still breaking some tests though